DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8060 and Rcc1

DIOPT Version :10

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_523943.1 Gene:Rcc1 / 38669 FlyBaseID:FBgn0002638 Length:547 Species:Drosophila melanogaster


Alignment Length:404 Identity:88/404 - (21%)
Similarity:154/404 - (38%) Gaps:121/404 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 NYNLGIGNEQNTNTPQAVDFFRKSNLWLEQVALGAYHSLFCDKK----GHLYAVGHGKGGRLGIG 216
            |.|.|...:|   .|:|    :::.:        |:| |...|:    |::...|:|..|:||:|
  Fly    10 NNNAGEAEQQ---PPKA----KRARI--------AFH-LELPKRRTVLGNVLVCGNGDVGQLGLG 58

  Fly   217 LENSLPAPKRVKVSSKLSG--DSIQCISVSRQHSLVLTHQSLVFACGLNTDHQLGVRDAAEQLTQ 279
             |:.|.. ||:   |.::|  |::. ||....|:||||....:::.|.|.:..|| ||.:|..::
  Fly    59 -EDILER-KRL---SPVAGIPDAVD-ISAGGMHNLVLTKSGDIYSFGCNDEGALG-RDTSEDGSE 116

  Fly   280 FK-EVVALRDKGASDLVRVIACDQHSIAYGSRC------VYVWGA---NQGQFGI----NSNTPS 330
            .| :::.|..|.    :.:.|.|.|     |.|      |:.||:   :.|..|:    |..|| 
  Fly   117 SKPDLIDLPGKA----LCISAGDSH-----SACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTP- 171

  Fly   331 ITVPTLIKLPAKTTIRFVEANNAATVIYNEEKIITLCYADKTRYIKTPNYEDLKSISVMGGNLKN 395
                          |..:|.....::....:.::.|..|.|...:.......|..:|      :.
  Fly   172 --------------IDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLS------ER 216

  Fly   396 STKGSAAALKLLMLTETNVVY--------LWYENTQQFYR------------CNF---------- 430
            |..|.....|..:|..|.::.        :|..|...|.|            .||          
  Fly   217 SISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGK 281

  Fly   431 ----SPIR--LHQIKKILYKCNQVMVLSEDGCVYRGKCNQIALPSSALQEKSRGSLDNWQDNDQN 489
                :||:  |..|:.|....:..::|:.|     .||:.:..|     |..|..|.:.:|..:.
  Fly   282 EFALTPIKTELKDIRHIAGGQHHTVILTTD-----LKCSVVGRP-----EYGRLGLGDVKDVVEK 336

  Fly   490 KTEISR--EHVIRI 501
            .|.:.:  |.::.:
  Fly   337 PTIVKKLTEKIVSV 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANKYR <51..141 CDD:440430
ANK repeat 56..87 CDD:293786
ANK repeat 89..121 CDD:293786
ATS1 140..>355 CDD:444065 56/218 (26%)
BTB_POZ 543..643 CDD:453885
BTB2_POZ_IBtk 691..802 CDD:349611
BACK_IBtk 798..857 CDD:350575
Rcc1NP_523943.1 ATS1 42..389 CDD:444065 78/356 (22%)
Borrelia_P83 <419..>508 CDD:114011
Blue background indicates that the domain is not in the aligned region.

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