DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8060 and Als2

DIOPT Version :9

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_001013431.1 Gene:Als2 / 363235 RGDID:1310372 Length:1651 Species:Rattus norvegicus


Alignment Length:1156 Identity:200/1156 - (17%)
Similarity:346/1156 - (29%) Gaps:460/1156 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 QVALGAYHSLFCDKKGHLYAVGHGKGGRLGIGLENSLP--------APKRVKVSSKLSGDSIQCI 241
            |.|||..|.:...:.|.:|:.|             :||        .|....:.|.|.|..:..:
  Rat    45 QAALGVKHGVLLTEDGEVYSFG-------------TLPWKSEAAEICPSSPLLESALVGHHVVTV 96

  Fly   242 SVSRQHSLVLTHQSLVFACGLNTDHQLGVRDAAEQLTQFKEVVALRDKGASDLVRV----IAC-D 301
            :....||..:|...:|:..|.|...|..|  |.:|.......|::.|...|.|:.|    :|| :
  Rat    97 ATGSFHSGAVTESGVVYMWGENAAGQCAV--ANQQYVSEPSPVSISDSETSPLLAVRILQLACGE 159

  Fly   302 QHSIAYG-SRCVYVWGANQGQFGINSNTPSITVPTLIKLPAKTTIRFVEANNAATVIYNEEKIIT 365
            :|::|.. ||.::.||.. .|.|:.:.|..:|.|..::..|...:..|......::      .:.
  Rat   160 EHTLALSISREIWAWGTG-CQLGLITTTFPVTKPQKVEHLAGRVVLQVACGAFHSL------ALV 217

  Fly   366 LCYADKTRYIKTPNYEDLKSISVMGGNLKNSTKGSAAALKLLMLTETNVVYLWYENTQQFYRCNF 430
            .|...          :|||.:.                                      .||| 
  Rat   218 QCLPP----------QDLKPVP--------------------------------------ERCN- 233

  Fly   431 SPIRLHQIKKILYKCNQVM----------VLSEDGCVYRGKCNQIALPSSALQEKSRGSLDNWQD 485
                         :|:|::          ::|:..|...|    :.|..|..::.:........:
  Rat   234 -------------QCSQLLITMTDKEDHVIISDSHCCPLG----VTLSESQAEKHASTVTSPHPE 281

  Fly   486 NDQNKTEISREHVIRIELQRVPNIDRAT---YIFCDEGFSSFAVLQESHTKYFRKPSLP------ 541
            ....:.|:....|...||..  ..|:.|   .|...:.....|.:..:.|    .||.|      
  Rat   282 TLDGQGEVFENTVAEAELNM--GSDQTTSGSAISAQQNIVGMAEVSSART----APSYPDTQTVT 340

  Fly   542 -----RREHSFK-------KL-------------LHE--TSDCDAVHDVVF---HVDGEKFAA-- 574
                 ..|||.|       ||             ||.  |:...|::.:|.   ...|.:.||  
  Rat   341 AYLQKLSEHSVKENHEREEKLPQVQPLVEEAVPDLHSPPTTSTSALNSLVVSCASAVGVRVAATY 405

  Fly   575 -------HKFI-IYSRAP---------------GLRDLIRCYLDKDIYLNFDHLTGKMFELILNH 616
                   .|.: .||.||               .|:||      ::..:..:.|.||....::: 
  Rat   406 EAGALSLKKVMNFYSTAPCEPGAPSGTASTGPESLKDL------REEQVKQESLQGKKSSSLMD- 463

  Fly   617 IYSSYWPTEDDID------CIQQSLGPANPQQRTRTCEMFLPHLEKFQLVELTKYVQSYVRDHQF 675
                  ..|::.:      .:...|...:|:...:...:      |.:.|.||   .:|..:...
  Rat   464 ------IREEESEGGSRRLSLPGLLSQVSPRLLRKAARV------KTRTVVLT---PTYSGEADA 513

  Fly   676 PLPNARKLF--------NRLYRSD-HPELYDVRIVCKDGKVL------GAHKCMLVARLEYFEMM 725
            .||:.|...        .:|...| .|.|..:.:.|.|||.:      |:|...|.|:.:.:.  
  Rat   514 LLPSLRTEVWTWGKGKEGQLGHGDVLPRLQPLCVKCLDGKEVIHLEAGGSHSLALTAKSQVYS-- 576

  Fly   726 FMHLWAER-----------------SSVTME-GV------------------------------- 741
                |...                 |.|:.| ||                               
  Rat   577 ----WGSNTFGQLGHSEFPTTVPRLSKVSSESGVWSVAAGHGYSLFLVDTEDFQPGLYYSGRQDR 637

  Fly   742 ---------PAEYMEPVL-----------------DYLYSLDNEAFCKQGYLETFLYNMITICDQ 780
                     |:....|||                 .||..:|...   .||:.: |:.:.|...:
  Rat   638 AEGDTLPENPSGTTTPVLLSCSKLGYISRVTAGKDSYLALVDKNI---MGYIAS-LHELATTERR 698

  Fly   781 YF-------------------------IESLQNVC------------------------------ 790
            ::                         ::.||.|.                              
  Rat   699 FYSKLSEIKSQILRPLLSLEHLGTVTTVQLLQEVASRFSKLCYLIGQHGASLSSYLQGMKEARNL 763

  Fly   791 -----ESLILDKISIRKCGEMLEFAAMYNCKILQKGCMDFICQNLSRVLCYRSIEQCDGETLKCL 850
                 .||.||..: ..|..:..|..|...::|.|..:||:.:|...:.....:...:.:.::.|
  Rat   764 VIMKHSSLFLDSYT-EYCTSVSNFLVMGGSQLLAKPAIDFLNKNQELLQDLSEVNDENTQLMEIL 827

  Fly   851 NDHYRKMFKRVFDYRQITPFSEAIEDELLLSFVDGCDV---DLNYRMDAESKLKQAAKHKQKDLR 912
            |..:....:|:.:|.::           ||......:|   :.....|:.|..:..|.|..|  :
  Rat   828 NALFFLPIRRLHNYAKV-----------LLKLATCFEVTSPEYQKLQDSSSCYESLALHLGK--K 879

  Fly   913 KQDARHQYEQQAISSMMRSLSISESTQGTEVPSSPQDSARSEDKNWSRVVDKKDQKRKLAETA-- 975
            :::|.:            :||..::     .|....||.|            |.::|.|.|::  
  Rat   880 RKEAEY------------TLSFWKT-----FPGKMTDSLR------------KPERRLLCESSNR 915

  Fly   976 ---------------LKVNNTLKHEDPPTQELVPIE---RKPLKEQTPPPPSHETEPTTPLSKSY 1022
                           :..|:.|.|....|..:.|:.   .:||.|:|  ...:..:.||| .:.:
  Rat   916 ALSLQHAGRFSVNWFILFNDALVHAQFSTHHVFPLATLWAEPLSEET--GGVNGLKITTP-EEQF 977

  Fly  1023 NLDFSSLTPQ---------SQKLSQKQRKRLSSESKSWRTNNPPLVEQSST 1064
            .|  .|.|||         ||.:.|..|          .|::.||...|||
  Rat   978 TL--ISSTPQEKTKWLRAISQAVDQALR----------GTSDFPLYGGSST 1016

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANK <46..138 CDD:238125
ANK repeat 56..87 CDD:293786
Ank_4 57..111 CDD:290365
ANK repeat 89..121 CDD:293786
Ank_2 95..>138 CDD:289560
RCC1 147..195 CDD:278826 5/9 (56%)
RCC1 199..251 CDD:278826 11/59 (19%)
BTB 547..>635 CDD:295341 23/143 (16%)
BTB 684..795 CDD:279045 34/260 (13%)
BTB 697..798 CDD:197585 32/241 (13%)
SPOP_C_like 798..>834 CDD:269810 8/35 (23%)
Als2NP_001013431.1 RCC1 1 59..108 11/61 (18%)
RCC1_2 93..122 CDD:290274 6/28 (21%)
RCC1 2 109..167 16/59 (27%)
RCC1 109..165 CDD:278826 15/57 (26%)
RCC1 3 169..218 10/55 (18%)
RCC1 170..216 CDD:278826 9/52 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 444..476 4/38 (11%)
RCC1 4 519..570 12/50 (24%)
RCC1 521..568 CDD:278826 10/46 (22%)
RCC1 5 572..621 6/54 (11%)
RCC1 573..619 CDD:278826 6/51 (12%)
RhoGEF 689..873 CDD:295373 26/195 (13%)
PH_alsin 899..1004 CDD:241423 28/131 (21%)
PH 920..998 CDD:278594 19/82 (23%)
COG4642 1043..1182 CDD:226989
MORN 1 1043..1065
MORN 1043..1063 CDD:280628
MORN 2 1066..1088
MORN 3 1094..1116
MORN 1094..1114 CDD:280628
MORN 4 1117..1139
MORN 5 1145..1167
COG4642 1166..>1266 CDD:226989
MORN 6 1169..1191
MORN 7 1192..1214
MORN 8 1215..1238
VPS9 1548..1647 CDD:280383
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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