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Protein Alignment CG8060 and Rcc1l

DIOPT Version :10

Sequence 1:	NP_611117.2	Gene:	CG8060 / 36824	FlyBaseID:	FBgn0034113	Length:	1189	Species:	Drosophila melanogaster
Sequence 2:	NP_001101802.1	Gene:	Rcc1l / 360796	RGDID:	1307558	Length:	461	Species:	Rattus norvegicus

Alignment Length:	247	Identity:	55/247 - (22%)
Similarity:	95/247 - (38%)	Gaps:	38/247 - (15%)

- Green bases have known domain annotations that are detailed below.

  Fly   140 LATDSQNDVLVWGS--NKNYNLGIGNEQNTNT----------PQAVDFFRKSNLWLEQVALGAYH 192
            |::.:::...|||.  ||:..||....:...|          |..:...|.....:.||:.|..|
  Rat   118 LSSKTKDVTKVWGMGLNKDSQLGFHRSRKDKTRGYEYVLEPSPVPLPLDRPQETKVLQVSCGRAH 182

  Fly   193 SLFCDKKGHLYAVG---HGKGGRLGIGLENSLPAPK-RVKVSSKLSGDSIQCISVSRQHSLVLTH 253
            ||....:..::::|   ||:.||..:  |:.:.:.. :|.......|..:|.: ..:.|||.||.
  Rat   183 SLVLTDREGVFSMGNNAHGQCGRKVV--EDEVYSESHKVHRMQDFEGQVVQVV-CGQDHSLFLTD 244

  Fly   254 QSLVFACGLNTDHQLGVRDAAEQLTQFKEVVALRDKGASDLVRVIACDQHSIAYGSRC------- 311
            :..|::||...|.|.|:        ....:.:...|...||..|...  ....||..|
  Rat   245 KGEVYSCGWGADGQTGL--------GHYNITSTPSKLGGDLAGVTVV--QVATYGDCCLALSADG 299

  Fly   312 -VYVWGANQG-QFGINSNTPSITVPTLIKLPAKTTIRFVEANNAATVIYNEE 361
             |:.||.::. |....:::..:.||..:.......::.|........|.|||
  Rat   300 GVFGWGNSEYLQLASVTDSTQVNVPRCLPFSGVGKVKQVACGGTGCAILNEE 351

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.