DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8060 and rcbtb1

DIOPT Version :9

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_956285.1 Gene:rcbtb1 / 336007 ZFINID:ZDB-GENE-030131-7951 Length:531 Species:Danio rerio


Alignment Length:727 Identity:153/727 - (21%)
Similarity:231/727 - (31%) Gaps:261/727 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 NDVLVWGSNKNYNLGIGNEQNTNTPQAVDFFRKSNLWLEQVALGAYHSLFCDKKGHLYAVGHGKG 210
            ::|.|.|.|.:..||.|:.|:|..|:.:|......|.......|. |.|...:.|.|||.||...
Zfish    41 DEVYVLGLNCSNCLGTGDSQSTIAPKKLDCLSGKKLISLSYGSGP-HVLLVTEDGELYAWGHNGY 104

  Fly   211 GRLGIGLENSLPAPKRVKVSSKLSGDSIQCISVSRQHSLVLTHQSLVFACGLNTDHQLGVRDAAE 275
            .:||.|..|...:|  :.||:.|.|..:..:|....|||.|||:..|||.|.|...|:|....|.
Zfish   105 SQLGNGTTNQGVSP--ILVSTNLQGKRVTEVSCGSHHSLALTHEGEVFAWGYNNCGQVGSGSTAN 167

  Fly   276 QLTQFKEVVALRDKGASDLVRVIACDQHS--IAYGSRCVYVWGAN-QGQFGINSNTPSITVPTLI 337
            |.|..|....|::|    ::..|||.|.|  ....:..||.||.| .||.|:.:|...:|...||
Zfish   168 QPTPRKVSNCLQNK----VIVNIACGQTSSMAVTDNGEVYGWGYNGNGQLGLGNNGNQLTPCRLI 228

  Fly   338 KLPAKTTIRFVEANNAATVIYNEEKIITLCYADKTRYIKTPNYEDLKSISVMGGNLKNSTKGSAA 402
            .|.....::....                 ||..                               
Zfish   229 ALQGFCVLQIASG-----------------YAHS------------------------------- 245

  Fly   403 ALKLLMLTETNVVYLWYENTQQFYRCNFSPIRLHQIKKILYKCNQVMVLSEDGCVYRG-KCNQIA 466
                |.||:..::|.|..||.                               |.:..| |.||::
Zfish   246 ----LALTDEGLLYAWGANTY-------------------------------GQLGTGNKSNQLS 275

  Fly   467 LPSSALQEKSRGSLDNWQDNDQNKTEISREHVIRIELQRVPNIDRATYIFCDEGFSSFAVLQESH 531
             |...:.||                    |.::.|                       |....:|
Zfish   276 -PVQVMTEK--------------------ERIVEI-----------------------AACHSTH 296

  Fly   532 TKYFRKPSLPRREHSFKKLLHETSDCDAVHDVVFHVDGEKFAAHKFIIYSRAPGLRDLIRCYLDK 596
            |...:..|         ..::....|.....|:.|:  ..||:           ..|:..|:...
Zfish   297 TSAAKTQS---------GQVYMWGQCRGQAIVLPHL--THFAS-----------TDDVFACFATP 339

  Fly   597 DI---YLNFDHLTGKMFELILNHIYSSYWPTEDDIDCIQQSLGPANPQQRTRTCEMFLPHLEKFQ 658
            .:   .|:.:|                     ||...:.|||                       
Zfish   340 SVMWRMLSMEH---------------------DDFLTVAQSL----------------------- 360

  Fly   659 LVELTKYVQSYVRDHQFPLPNARKLFNRLYRSDHPELYDVRIVCKDGKVLGAHKCMLVARLEYFE 723
                                  :|.|      |:||..|:.... |||.:..||.:|..|.|:|.
Zfish   361 ----------------------KKEF------DNPETSDLEFSI-DGKYIHVHKAVLKIRCEHFR 396

  Fly   724 MMFMHLWAERSSVTMEGVPAEYMEPV----LDYLY--SLD---NEAFCKQGYLETFLYNMITICD 779
            .||...|.|.....:|  ..::..||    |::||  |:|   .:|.           .::.:..
Zfish   397 SMFQSHWNEDMKEVIE--IDQFSYPVYRSFLEFLYTDSVDLPPEDAI-----------GLLDLAT 448

  Fly   780 QYFIESLQNVCESLILDKISIRKCGEMLEFAAMYNCKILQKGCMDFICQNLSRVLCYRSIEQCDG 844
            .|....|:.:|:.:|...|::.....:|..|..|:.:.|::.|..|...:|:.|....:..|.||
Zfish   449 SYCENRLKKLCQHIIKRGITVENAFSLLSAAIRYDAEDLEEFCFKFCVNHLTEVTQTAAFWQIDG 513

  Fly   845 ETLK---CLNDH 853
            ..||   |...|
Zfish   514 NMLKEFICRASH 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANK <46..138 CDD:238125
ANK repeat 56..87 CDD:293786
Ank_4 57..111 CDD:290365
ANK repeat 89..121 CDD:293786
Ank_2 95..>138 CDD:289560
RCC1 147..195 CDD:278826 14/47 (30%)
RCC1 199..251 CDD:278826 19/51 (37%)
BTB 547..>635 CDD:295341 12/90 (13%)
BTB 684..795 CDD:279045 30/119 (25%)
BTB 697..798 CDD:197585 27/109 (25%)
SPOP_C_like 798..>834 CDD:269810 8/35 (23%)
rcbtb1NP_956285.1 RCC1 40..90 CDD:278826 15/49 (31%)
RCC1_2 77..106 CDD:290274 9/29 (31%)
RCC1 93..143 CDD:278826 19/51 (37%)
RCC1 146..196 CDD:278826 18/53 (34%)
RCC1 199..248 CDD:278826 16/100 (16%)
RCC1 251..299 CDD:278826 17/122 (14%)
BTB 360..464 CDD:279045 32/168 (19%)
BTB 371..467 CDD:197585 27/109 (25%)
SPOP_C_like 467..525 CDD:269810 15/57 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4885
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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