DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8060 and Rccd1

DIOPT Version :9

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:XP_006229517.1 Gene:Rccd1 / 308760 RGDID:1309901 Length:378 Species:Rattus norvegicus


Alignment Length:378 Identity:77/378 - (20%)
Similarity:119/378 - (31%) Gaps:126/378 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 NGQDYESGSSPLHRALYYGSIDCA---VLLLRYGASLELLDEDTRCPLQAICRKCDDDDLATDSQ 145
            |||.......|||.|.....:..:   ..|:..|..:| |.....|              |.|..
  Rat    25 NGQHAVHSPEPLHAADDVCQVSASWSYTALVTRGGRVE-LSGSVSC--------------AADGC 74

  Fly   146 NDVLVWGS--------NKNYNLGIGNEQNTNTPQAVDFFRKSNLWLE------------------ 184
            .|  ||.|        ||:   |.|.|.....|.:.  .:...||::                  
  Rat    75 RD--VWASEGLLVVQRNKS---GSGTELQAWVPGSA--LQGEPLWVQNLASGAKAQGEDEPGSEP 132

  Fly   185 --------------------------------QVALGAYHSLFCDKKGHLYAVGHGKGGRLGIGL 217
                                            |:.|||.|:|...:.|.:::.|.|:.|:||.| 
  Rat   133 RMGTLPLLPCARAYMTPQPPFCQPLAPELRVRQLQLGAEHALLLCEAGQVFSWGGGRHGQLGHG- 196

  Fly   218 ENSLPAPKRVKVSSKLSGDSIQCISVSRQHSLVLTHQSLVFACGLNTDHQLGV--RDAAEQLTQF 280
              ||.|....::...|.|..:..::....||:.::....::..|.|...||.:  |...|:.|..
  Rat   197 --SLEAELEPRLLEALQGLRMAEVAAGGWHSVCVSETGDIYIWGWNESGQLALPTRSGTEKKTVR 259

  Fly   281 KEVVALRDKG-------------------------------ASDLVRVIACDQHSIAYGSRC--V 312
            :|...|.|.|                               .||.|:. :|.....|..:|.  :
  Rat   260 EEATELNDDGLRGEEAALADVGAPAHFIAIQPFPALLDLPLGSDAVKA-SCGSRHTAVVTRTGEL 323

  Fly   313 YVWG-ANQGQFGINSNTPSITVPTLIK--LPAKTTIRFVEANNAATVIYNEEK 362
            |.|| ...||.|...:|.| ..|..::  :..:..:|.|......|.:|..|:
  Rat   324 YTWGWGKYGQLGHKDSTSS-DQPCRVEYFVERQLEVRAVTCGPWNTYVYAVER 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANK <46..138 CDD:238125 12/56 (21%)
ANK repeat 56..87 CDD:293786 2/2 (100%)
Ank_4 57..111 CDD:290365 7/29 (24%)
ANK repeat 89..121 CDD:293786 7/34 (21%)
Ank_2 95..>138 CDD:289560 8/45 (18%)
RCC1 147..195 CDD:278826 17/105 (16%)
RCC1 199..251 CDD:278826 14/51 (27%)
BTB 547..>635 CDD:295341
BTB 684..795 CDD:279045
BTB 697..798 CDD:197585
SPOP_C_like 798..>834 CDD:269810
Rccd1XP_006229517.1 RCC1_2 163..192 CDD:290274 9/28 (32%)
RCC1 180..228 CDD:278826 14/50 (28%)
RCC1_2 218..244 CDD:290274 4/25 (16%)
RCC1_2 305..333 CDD:290274 7/28 (25%)
RCC1 321..368 CDD:278826 11/47 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.