DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8060 and Rpgr

DIOPT Version :9

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_001171421.1 Gene:Rpgr / 19893 MGIID:1344037 Length:1039 Species:Mus musculus


Alignment Length:1177 Identity:201/1177 - (17%)
Similarity:378/1177 - (32%) Gaps:385/1177 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GRSAVHMSASTARYEILEWLLNHGAYINGQDYE--------SGSSPLHRALYYGSIDCAVLLLRY 113
            ||:...:|..|.           |.|..|.:.|        ......|:.:::...| .:..|..
Mouse   133 GRNHTLVSTDTG-----------GVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPAD-TIKQLSA 185

  Fly   114 GASLE-LLDEDTRCPLQAICRKCDDDDLATDSQNDVLVWGSNKNYNLGIGNEQNTNTPQAVDFFR 177
            ||:.. .|.||.:                      :.:||.|....:|:.::.|...|..|. ..
Mouse   186 GANTSAALTEDGK----------------------LFMWGDNSEGQIGLEDKSNVCIPHEVT-VG 227

  Fly   178 KSNLWLEQVALGAYHSLFCDKKGHLYAVGHGKGGRLGIGLE---------NSLPAPKRVKVSSKL 233
            |...|   ::.|.|||.|....|.||..|..:.|:||:..|         ..|..|:||      
Mouse   228 KPISW---ISCGYYHSAFV
TMDGELYTFGEPENGKLGLPNELLMNHRSPQRVLGIPERV------ 283

  Fly   234 SGDSIQCISVSRQHSLVLTHQSLVFACGLNTDHQLGVRDAAEQLTQFKEVVALRDKGASDLVRVI 298
                || ::....|::||| :.:|:|.||....|||:.....:.::.|.:..::|:    .:..|
Mouse   284 ----IQ-VACGGGHTVVLT-EKVVYAFGLGQFGQLGLGTFLFETSEPKIIERIKDQ----KICHI 338

  Fly   299 ACDQHSIAYGSR--CVYVWG-ANQGQFGIN-SNTPSITVPTLIKLPAKTTIRFVEANNAATVIYN 359
            :|.::..|..:.  .:|.:| ...|:.|:. .|..:...|||.....:..::.:.......:::.
Mouse   339 SCGENHTALMTELGLLYTFGDGRHGKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHMLVFA 403

  Fly   360 EEKIITLCYADKTRYIKTPNYEDLKSISVMGGNLKNSTKGSAAALKLLMLTETNVVYLWYENTQQ 424
            ..::.|         |..|.:||                                ||..|.:|..
Mouse   404 TPRLGT---------IDEPKFED--------------------------------VYEPYISTGS 427

  Fly   425 FYRCNFSP---------IRLHQIKKILYKCNQVMV----------LSEDGCVYRGKCNQIALPSS 470
            |...:.||         .||.:.::....|:..||          .|.....|         |||
Mouse   428 FSINDLSPRSSLNRSLSARLRRRERERPPCSASMVGTLPPLEGTSASTSAYFY---------PSS 483

  Fly   471 A--------LQEKSRG------SLDNWQDNDQNKTEISREHVIRI----ELQRVPNIDRATYIFC 517
            .        ..|||..      ..|.::|.....||......:..    |...:.|:........
Mouse   484 PPFHLSVNNYPEKSPSESMEPLDSDYFEDKMNKDTETENSSAVDSENFGETNDILNMTHMMTTSS 548

  Fly   518 DEGFSSFAVLQESHTKYFRKPSLPRREHSFKKLLHETSDCDAVHDVVFHVDGEKFAAHKFIIYSR 582
            :|....|:.:|:.           :.:.:|:|:: |::.|....|...:.:..|.  .:..:|.:
Mouse   549 NEKLLDFSPIQKQ-----------QNQDTFEKVM-ESTPCTENEDSYEYEEMSKI--KEVTVYKQ 599

  Fly   583 --APGL-----RDLIRCYLDKDIYLNFDHL-------TGKMFELILNHIYSSYWPTEDDIDCIQQ 633
              |.|:     .:::..:.|:::....|.:       .||       .:.|.....|.|.:.:.:
Mouse   600 YLAKGIYMIRPAEILEAFSDEEVGNGLDQVEEPRVFTDGK-------GLQSKQVGKESDEEIVSE 657

  Fly   634 SLGPANPQQRTRTCEMFLPHLEKFQLVELTKYVQSYVRDHQFPLPNARKLFNRLYRSDHPELYD- 697
                                 :|.:::|:.               :.:|:......|....|:| 
Mouse   658 ---------------------KKTEVMEVA---------------DVKKIRESEENSKSDSLFDD 686

  Fly   698 -----VRIVCKDGKVLGAHKCMLVARLEYFEMMFMHLWAERSSVTMEGVPAEYMEPVLDYLYSLD 757
                 :....:|.|.:...:     |.....|.|      .|...:...|..|||          
Mouse   687 LPDKTMNSESEDNKDIAEER-----RSSEQNMTF------DSETELVEEPDSYME---------- 730

  Fly   758 NEAFCKQGYLETFLYNMITICDQYFIESLQNVCESLILDKISIRKCGEMLEFAAMYNCKILQKGC 822
                                |:::   |.|:..|.|...|        ::|:::.      :|..
Mouse   731 --------------------CERH---SEQDSAEELEQPK--------LVEYSSE------EKDE 758

  Fly   823 MDFICQNLSRVLCYRSIEQCDGETL----KCLNDHYRKMFK--RVFDYRQITPFSEAIEDELLLS 881
            .|           .:..::.:.|.|    .|.......:|:  |.|      |..:...|.|   
Mouse   759 KD-----------EKDDDEVETENLWYDRNCTEQETENVFRATRFF------PKFDLKHDHL--- 803

  Fly   882 FVDGCDVDLNYRMDAESK--LKQAAKHKQKDLRKQDARHQYEQQAISSMMRSLSISESTQGTEVP 944
              .|...:.....|:|..  ::|..:.::::|..:..|.:.:.:|.|.:   ::..|:.|.:|. 
Mouse   804 --SGIPEEQEGPEDSEGNVVVEQVVQAQKENLEFEGDRKEAKAEAPSDV---ITEKEAPQLSET- 862

  Fly   945 SSPQDSARSEDKNWSRVVDKKDQKRKLAE--------------------TALKVNNTLKHEDPPT 989
            ..|::....|:.:...|.|..:::||..|                    |..|::..||.||..:
Mouse   863 VKPEEGEMDEEISILNVEDTVEEERKEGEKEIVEEGSIPETEGSETIDITDEKLDEVLKEEDSAS 927

  Fly   990 QELVPIERKPLKEQTPPPPSHETEPTTPLSKSY---NLDFSSLTPQSQKLSQKQRKRLSSESKSW 1051
                 :.::.|:|....|..|..:.....|...   |...|....:::|:|...|..|:.:....
Mouse   928 -----LLQRALREYNENPKGHMYDRVKSSSSEILGGNDPTSKDIKKAKKISFFNRMSLTGQKLMQ 987

  Fly  1052 RTNNP-PLVEQSSTPVAVPNAWGVTTTPSGSFNDSFTSPTTGSSTDPTSFANMMRGHATSSTTPT 1115
            .||:| |.::.....:|:                        .|....:..|.|..:...||||.
Mouse   988 NTNDPLPEIKPIGDQIAL------------------------QSDKKDANQNHMGQNLQDSTTPN 1028

  Fly  1116 DQSQSFS 1122
            .:.:|.|
Mouse  1029 MEGKSKS 1035

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANK <46..138 CDD:238125 16/89 (18%)
ANK repeat 56..87 CDD:293786 7/29 (24%)
Ank_4 57..111 CDD:290365 10/61 (16%)
ANK repeat 89..121 CDD:293786 6/40 (15%)
Ank_2 95..>138 CDD:289560 8/43 (19%)
RCC1 147..195 CDD:278826 13/47 (28%)
RCC1 199..251 CDD:278826 15/60 (25%)
BTB 547..>635 CDD:295341 16/101 (16%)
BTB 684..795 CDD:279045 18/116 (16%)
BTB 697..798 CDD:197585 16/106 (15%)
SPOP_C_like 798..>834 CDD:269810 3/35 (9%)
RpgrNP_001171421.1 RCC1_2 78..104 CDD:290274
RCC1 93..139 CDD:278826 2/5 (40%)
RCC1 144..193 CDD:278826 9/60 (15%)
RCC1_2 180..209 CDD:290274 9/50 (18%)
RCC1 196..243 CDD:278826 14/72 (19%)
RCC1 246..296 CDD:278826 15/60 (25%)
RCC1 301..348 CDD:278826 12/50 (24%)
RCC1 352..398 CDD:278826 8/45 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.