DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8060 and ran-3

DIOPT Version :10

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:NP_495753.1 Gene:ran-3 / 174332 WormBaseID:WBGene00004304 Length:569 Species:Caenorhabditis elegans


Alignment Length:428 Identity:87/428 - (20%)
Similarity:144/428 - (33%) Gaps:99/428 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 LGIGNEQNTNTPQAVDFFRKSNLWLEQVALGAYHSLFCDKKGHLYAVGHGKGGRL---GIGLENS 220
            ||......|..|:.||.|.:..|...|...|..||.....:|.:|..|..:.|.:   |:..|.|
 Worm   163 LGHPGRTTTKKPRKVDIFEEEGLKPLQAVAGGVHSAVLTSEGEVYMCGINEKGTVPAEGVEKEGS 227

  Fly   221 LPAPKRVKVSSKLSGD-SIQCISVSRQHSLVLTHQSLVFACGLNTDHQLGVRDAAEQLTQFKEV- 283
            .....:||....:..: .|..::.....:..||.|..|.|.| |..:..|..|....|.:.:|. 
 Worm   228 TDEFAKVKFEEDIEKEGKIVMLAAGASFTAALTDQGSVIAWG-NLRNSNGNVDVHPLLHKMQEAP 291

  Fly   284 VALRDKGASDLVRVIACDQHSIAYGSR-CVYVWG-ANQGQFGINSNTPSI-------------TV 333
            |.:..:....:|::.|.:.|.:....: |:..:| ...||.|.:|.|.:|             .|
 Worm   292 VVIVHQAKRKIVKIAAGENHLVMLDEKGCLLTFGDGEMGQLGRSSRTKTIRSKYMCDESGDHLLV 356

  Fly   334 PTLIKLPAK---TTIRFVEANNAATVIYNEEKIITLCYADKTRYIKTPNYEDLKSISVMGGNLKN 395
            |...|...|   ...:.|.|:...|:::.|:        .|.......||..| .|.|...::..
 Worm   357 PLRFKHKGKFFDVVAKNVFASGFWTIVHGED--------GKYYAFGLNNYAQL-GIKVDEADVGQ 412

  Fly   396 STKGSAAALKLLMLTETNV-----VYLWYENTQQFYRCNFSPIRLHQIKKILYKCNQVMVLSEDG 455
            ..:.: ..|::.:..|...     .::..|..|                       .|::|..||
 Worm   413 DGQDN-RELRVFLPAEAPAFGAERTFVNIEGVQ-----------------------HVVILGSDG 453

  Fly   456 CVY-RGKCNQIALPSSALQEKSRGSLDNWQDNDQNKTEISREHVIRIELQRVP--------NIDR 511
            .|: .||....||           .|.||...|      .::|.:...:|.:.        :...
 Worm   454 KVFAMGKNTDNAL-----------GLGNWTGKD------DQQHWLYDTIQEIEFDSKIVGVSAKL 501

  Fly   512 ATYIFCDEGFSSFA-----------VLQESHTKYFRKP 538
            ||.|...|..:::|           .|::...|...||
 Worm   502 ATSIAWSEDGTAYAWGFDTTGQLGLGLKDEDEKMVSKP 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANKYR <51..141 CDD:440430
ANK repeat 56..87 CDD:293786
ANK repeat 89..121 CDD:293786
ATS1 140..>355 CDD:444065 51/218 (23%)
BTB_POZ 543..643 CDD:453885
BTB2_POZ_IBtk 691..802 CDD:349611
BACK_IBtk 798..857 CDD:350575
ran-3NP_495753.1 DTHCT 70..176 CDD:462355 4/12 (33%)
ATS1 189..527 CDD:444065 75/388 (19%)
RCC1 510..565 CDD:395335 5/30 (17%)
Blue background indicates that the domain is not in the aligned region.

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