DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8060 and als2b

DIOPT Version :9

Sequence 1:NP_611117.2 Gene:CG8060 / 36824 FlyBaseID:FBgn0034113 Length:1189 Species:Drosophila melanogaster
Sequence 2:XP_009300450.1 Gene:als2b / 100318899 ZFINID:ZDB-GENE-080929-1 Length:1706 Species:Danio rerio


Alignment Length:814 Identity:161/814 - (19%)
Similarity:266/814 - (32%) Gaps:311/814 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 LYAVGHGKGGRLGIGLENSLP--APKRVKVSSKLSGDSIQCISVSRQHSLVLTHQSLVFACGLNT 264
            :::.|.|:.|:||.|  :.||  .|..||   .|:|..:..::....|||.||.||.||:.|.||
Zfish   568 VWSWGQGQDGQLGHG--DLLPRLQPDCVK---SLNGKEVLKVAAGAHHSLALTAQSQVFSWGCNT 627

  Fly   265 DHQLGVRDAA---EQLTQFKEVVALRDKGASDLVRVIACDQHS--IAYGSRCVYVWGANQGQFGI 324
            ..|||..::.   .|||:..:.:.:.|.||.        .||:  :|.|. |:.......||   
Zfish   628 SGQLGHMESPTTFPQLTKLSDGIRVWDIGAG--------LQHTLLLADGD-CIQPILYYSGQ--- 680

  Fly   325 NSNTPSITVPTLIKLPAKTTIRFVEANNAATVIYNEEKIITLCYADKTRYIKTPNYEDLKSISVM 389
              ....:..||              .....|..|.::.:: |.:.....|:.          ||.
Zfish   681 --QVKEVPEPT--------------EEEEQTAEYTQQPVL-LPFCMNLGYVS----------SVY 718

  Fly   390 GGNLKNSTKGSAAALKLLMLTETNV---VYLWYE--NTQQFYRCNFSPIRLHQIKKILYKCNQVM 449
            .|       |...|    .||:.||   :...:|  ..::.|.|..|.|:...::.:|       
Zfish   719 AG-------GRTCA----ALTDCNVMGFIASLHELAAAERKYYCKLSNIKSLLLQPLL------- 765

  Fly   450 VLSEDGCVYRGKCNQIALPSSALQEKSRGSLDNWQDNDQNKTEISREHVIRIE--LQRVPNIDRA 512
                       |.:.:   ||||.:.|.|.|.|........::::.::...:.  |||..:|   
Zfish   766 -----------KLDSL---SSALGQSSAGLLQNLIGRMSRLSQLTGQNSASLTSFLQRSRDI--- 813

  Fly   513 TYIFCDEGFSSFAVLQESHTKYFRKPSLPRREHSFKKLLHETSDCDAVHDVVFHVDGEKFAAHKF 577
                     ....:|:::|.              |.....|.|  .||.|::  |.|        
Zfish   814 ---------RGLVILEDAHL--------------FLDTYSEYS--SAVGDLL--VMG-------- 843

  Fly   578 IIYSRAPGLRDLIR-CYLDKDIYLNFDHLTGKMFELILNHIYSSYWPTEDDIDCIQQSLGPANPQ 641
                   |.:.|:: |:   |::       ||..|::           :...:|.::.|      
Zfish   844 -------GFQALVKPCH---DVF-------GKGAEVV-----------QRLSECSEEGL------ 874

  Fly   642 QRTRTCEMFLPHLEKFQLVELTKYVQSYVRDHQFPLPNARKLFNRLYRSDHPELYDVRIVCKDGK 706
                |....|.||....:..|.:|                   .||                   
Zfish   875 ----TLADVLAHLFYLPIKHLHEY-------------------GRL------------------- 897

  Fly   707 VLGAHKCMLVARLEY---------FEMMFMHLWAERSSVTMEGVPAEYMEPVLDYLYSLDNEAFC 762
            :|....|..|:.::|         ||.|.:||...|..       |||                 
Zfish   898 LLKLATCYEVSSVDYQKLQDACSKFESMALHLKRRRKE-------AEY----------------- 938

  Fly   763 KQGYLETFLYNMITICDQYFIESLQNVCESLILDKISIRKCGEMLEFAAMYNCKILQKGCMDFIC 827
                         |:   :|.:|..                |:|.:        .|:|.....||
Zfish   939 -------------TL---HFWKSFP----------------GKMTD--------SLRKPSRRLIC 963

  Fly   828 QNLSRVLCYRSIEQCDGETLKCLND---HYRKM--FKRVFDYRQITPFS----EAIEDELLLSFV 883
            ::.::.|..::..:.........||   |.:.|  :|.:|....|.|.:    |.|.:|  .:.|
Zfish   964 ESSNKALTLQNAGRFSVNWFILFNDALVHAQGMVPYKSLFSTHHIFPLATLWVEPISEE--STGV 1026

  Fly   884 DGCDV---DLNYRMDAESKLKQAAKHKQKDLRKQDARHQYEQQAISSMMRSLSISESTQGTEVPS 945
            .|..|   :.::.:.|.|..::|     |.||   :.:|..:||:|.:... .|..||..|:...
Zfish  1027 YGLKVTSPEESFALLASSPAEKA-----KWLR---SINQAVEQALSGLGHD-GIPPSTGMTQRAD 1082

  Fly   946 SP----------QDSARSEDKNWSRVVDKKDQKR 969
            .|          :||...:.|...|.|..|...|
Zfish  1083 PPISRTASYTFYKDSRLKDAKYDGRWVSGKPHGR 1116

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8060NP_611117.2 ANK <46..138 CDD:238125
ANK repeat 56..87 CDD:293786
Ank_4 57..111 CDD:290365
ANK repeat 89..121 CDD:293786
Ank_2 95..>138 CDD:289560
RCC1 147..195 CDD:278826
RCC1 199..251 CDD:278826 16/50 (32%)
BTB 547..>635 CDD:295341 16/88 (18%)
BTB 684..795 CDD:279045 18/119 (15%)
BTB 697..798 CDD:197585 16/109 (15%)
SPOP_C_like 798..>834 CDD:269810 6/35 (17%)
als2bXP_009300450.1 RCC1_2 88..117 CDD:290274
RCC1 104..160 CDD:278826
RCC1 165..211 CDD:278826
RCC1 567..614 CDD:278826 16/50 (32%)
RCC1 619..665 CDD:278826 16/53 (30%)
PH_alsin 952..1065 CDD:241423 28/130 (22%)
COG4642 1085..1290 CDD:226989 7/32 (22%)
MORN 1104..1124 CDD:280628 4/13 (31%)
MORN 1153..1173 CDD:197832
VPS9 1603..1702 CDD:280383
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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