DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ITGAE and scb

DIOPT Version :10

Sequence 1:NP_002199.3 Gene:ITGAE / 3682 HGNCID:6147 Length:1179 Species:Homo sapiens
Sequence 2:NP_523750.2 Gene:scb / 36692 FlyBaseID:FBgn0286785 Length:1115 Species:Drosophila melanogaster


Alignment Length:1016 Identity:233/1016 - (22%)
Similarity:391/1016 - (38%) Gaps:269/1016 - (26%)


- Green bases have known domain annotations that are detailed below.


Human   355 NLIASDPDETHAFKVTNYMALDGLLSKLRYNIISMEGTVGDA-LHYQLAQIGFSAQILDER-QVL 417
            |.:||.|..     ||....|     :|:...:..|.....| ..|.:.::|.||.:.|:. :.|
  Fly   167 NTVASTPQH-----VTRISPL-----RLKSEQVKEEDNGNKASFFYIMGELGLSAHVADDNTKFL 221

Human   418 LGAVGAFDWSGGALLY--------DTRSRR--GRFLNQTAAAAADAEAAQY-------------- 458
            :||.|...|.|..:||        .|.|||  .:.|.:|   ..|.::..|              
  Fly   222 IGAPGINTWRGSVILYRQVDPVDNPTASRRDTSKALRRT---YRDVDSNDYTPEHYAPEIPTPGL 283

Human   459 ------SYLGYAVAV----LHKTCSLSYIAGAPR-YKHHGAVFELQKEGREASFLPVLEGEQMGS 512
                  ||.||||:.    ......|.|:|.||: .|..|..:.....|:......|..|||.|.
  Fly   284 WGQEEDSYFGYAVSSGFFDSSNPTKLLYVATAPQANKQSGEAYIFDVRGKSIHKYHVFRGEQFGE 348

Human   513 YFGSELCPVDIDMDGSTDFLLVAAPFYHVHG--EEGRVYVYRLSEQDGSFSLARILSGHPGFTNA 575
            |||..:...|::.||.|| ::|:||.:.:..  :.|.:||:   ...|.|:..|.:...|..|.|
  Fly   349 YFGYSVLAEDLNGDGKTD-VIVSAPQHALEDSHDNGAIYVF---INKGFFNFERQILRSPVETMA 409

Human   576 RFGFAMAAMGDLSQDKLTDVAIGAPLEGFGADDGASFGSVYIYNGHWDGLSASPSQRIRASTVAP 640
            |||.|::.:||::.|...|||:|||..|        .|:|:||.|..:||...||||:.|.:..|
  Fly   410 RFGTALSRLGDINHDGYNDVAVGAPFAG--------NGTVFIYLGSENGLRDQPSQRLDAPSQQP 466

Human   641 ---GLQYFGMSMAGGFDISGDGLADITVGTLGQAVV--FRSRPVVRLKV-----SMAFTPSALPI 695
               |...||..::.|.||.|:|..|..:|......|  :|:.|||::..     |....|.    
  Fly   467 SKYGSHMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKVHATVKSESREIKPE---- 527

Human   696 GFNGVVNVRLCFEISSVTTASESGLREALLNFTLDVDVGKQRRRLQCSDVRSCLGCLREWSSGSQ 760
              ...|.:..|:.:|  ||:::..::|..|...:.:|  ||.:|::.:..::.....:..::..:
  Fly   528 --QEKVKITACYRLS--TTSTDKLVQEQELAIRIAMD--KQLKRVKFTQTQTNEISFKVNANFGE 586

Human   761 LCEDLLLMPTEGELCEEDCFSNASVKVSYQL--QTPEGQTDHPQPILDRYTEPFAIFQ-LPYEKA 822
            .|.|   ..|:....|:|.|:...:::.|:|  :.|:.:.......:...|||....| :.:...
  Fly   587 QCRD---FETQVRYSEKDIFTPIDLEMHYELTKKVPDSEEFCETCAIVDPTEPKVSTQNIIFSTG 648

Human   823 CKNKLFCVAELQLATTVSQQELVVGLTKELTLNINLTNSGEDSYMTSMALNYPRNLQLKRMQKPP 887
            |...: |.|:|||.:.......::|....|.||..:||.||.:|:..  .|.....:|...|.|.
  Fly   649 CATDV-CTADLQLRSKDVSPTYILGSADTLRLNYEITNIGETAYLPQ--FNVTSTSRLAFAQVPG 710

Human   888 SPNIQCDDPQPVASVLIMNCRIGHPVLKRSSAHVSV---VWQL----------------EENAFP 933
            :..:       |.:|::.:...|.|:.|..:..|::   |.||                |:|...
  Fly   711 NCKV-------VDAVMVCDLNRGRPLAKGDTDSVTISFDVSQLSGQSLIIHAEVFSTGYEQNPTD 768

Human   934 NRT---------ADITVTVTNSNERRSLANETHTLQFRHGFVAVLSKPSIMYVNTGQGLSHHKEF 989
            ||.         .:|..:...:|.:..|.:.:::.:..:.:....:.||::...|   :|.:...
  Fly   769 NRQTNVIGLKEFTEIDASGGQTNSQIDLEHYSNSAEIVNNYEIKSNGPSVIEQLT---VSFYIPI 830

Human   990 LFHVHGENL-----------FGAEYQLQIC------------------VPTKLRGLQVVAVKKLT 1025
            .:.|.|...           ..|.|..|:.                  |.|.|.|    .:::..
  Fly   831 AYKVAGSTAIIPIINVTSLKMQASYDSQLLSIDLYDQNNTMLVVDPVEVTTTLSG----GLERTV 891

Human  1026 RTQ---------------------ASTVCT--WSQERACAYSSVQHVEEWHSVSCVIASD----- 1062
            .||                     .|.|.|  .|::|....:...:.|::..:|.|.|.|     
  Fly   892 ITQNRQSYDIHTSGHVHQTMEVLDTSMVATASMSRKRRDLKALTANREQYARISNVKAHDLLSDD 956

Human  1063 ------------------KENVTVAAEI-----------------------------SWDHSEEL 1080
                              :..:.|.||:                             .|::. .:
  Fly   957 FKGKLPVNRTIVFNCRDPEMTICVRAEMRVHFRPEKSINLNMRYSVDLNEVNAILVDPWEYF-VI 1020

Human  1081 LKDVTELQILGE-----ISFNKSLYEGLNAENHRTKITVVFLKDEKYHSLP--IIIKGSVGGLLV 1138
            |.|: :||..|:     .|.|:.:...:.:::..|             .||  |||...:||||:
  Fly  1021 LTDL-KLQKKGDPTSTSFSINRRIEPNIISKHQET-------------GLPIWIIIVSVIGGLLL 1071

Human  1139 LIVILVILFKCGFFKR-KYQQLNLESIRKAQLKSENLLEEE 1178
            |..|..:|:|.|||.| |..:|:       :|..:|.:|.|
  Fly  1072 LSAISYLLYKFGFFNRTKKDELD-------RLVQQNPVEPE 1105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ITGAENP_002199.3 FG-GAP 1 22..79
FG-GAP 2 80..138
X-domain (extra domain) 145..199
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 158..200
vWA_integrins_alpha_subunit 201..378 CDD:238746 7/22 (32%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 390..442 19/63 (30%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 447..499 16/76 (21%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 500..560 20/61 (33%)
Int_alpha 510..561 CDD:214549 16/52 (31%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 563..627 25/63 (40%)
Int_alpha 574..633 CDD:214549 25/58 (43%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 631..691 20/69 (29%)
Int_alpha 643..>678 CDD:214549 11/36 (31%)
Integrin_alpha2 677..>951 CDD:462478 63/309 (20%)
GFFKR motif 1150..1154 3/3 (100%)
scbNP_523750.2 Int_alpha 51..103 CDD:214549
FG-GAP 350..388 CDD:460357 12/38 (32%)
Int_alpha 409..459 CDD:214549 25/57 (44%)
Int_alpha 473..>515 CDD:214549 14/41 (34%)
Integrin_alpha2 509..829 CDD:462478 68/345 (20%)
Blue background indicates that the domain is not in the aligned region.

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