DRSC/TRiP Functional Genomics Resources

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Protein Alignment cato and olig3

DIOPT Version :10

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_001008191.1 Gene:olig3 / 493553 XenbaseID:XB-GENE-919789 Length:263 Species:Xenopus tropicalis


Alignment Length:164 Identity:53/164 - (32%)
Similarity:72/164 - (43%) Gaps:31/164 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 DAAGGTQTELGPIMEAQ--GQHTQPQTKRRSNSFT----------------GSDGRKSSPE---Q 93
            |::..:.....|.||..  ..|.:|..:..|.|.|                ||.|...|.:   :
 Frog     4 DSSSMSSRASSPDMEDMYLRSHHRPDNRMSSVSSTQNDMLQKMSEEMLSKHGSRGEGESSKYKIK 68

  Fly    94 TNLSPTVQKRRRQAANARERKRMNGLNAAFERLREVVP---APSIDQKLSKFETLQMAQSYILAL 155
            ..||....::.|...|.||||||:.||.|.:.||||:|   .||: :||||..||.:|::|||.|
 Frog    69 KQLSEQDLQQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSV-RKLSKIATLLLARNYILML 132

  Fly   156 CDLLNNGDVEVDAAAYTIFGDSDSGF--GLSGGS 187
            ...|.    |:......|:|...|.|  |..|.|
 Frog   133 TSSLE----EMKRLVGEIYGGHHSAFHCGTVGHS 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 bHLH_TS_ATOH1_like 104..159 CDD:381436 29/57 (51%)
olig3NP_001008191.1 bHLH_SF 64..144 CDD:469605 33/84 (39%)

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