DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cato and hlh-4

DIOPT Version :10

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_001379052.1 Gene:hlh-4 / 176372 WormBaseID:WBGene00001951 Length:205 Species:Caenorhabditis elegans


Alignment Length:67 Identity:22/67 - (32%)
Similarity:37/67 - (55%) Gaps:5/67 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 PTVQKRRRQAANARERKRMNGLNAAFERLREVVPA-PSIDQKLSKFETLQMAQSYILALCDLLNN 161
            |.|..:|    |||||.|::.:|.||..|::.:|: ....:::||...|..|.:||..|..|:.:
 Worm     2 PMVVAKR----NARERTRVHTVNQAFLVLKQHLPSLRQFTKRVSKLRILNAAITYIDTLLKLIQS 62

  Fly   162 GD 163
            .:
 Worm    63 SE 64

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 bHLH_TS_ATOH1_like 104..159 CDD:381436 19/55 (35%)
hlh-4NP_001379052.1 bHLH_TS_ASCL 5..60 CDD:381424 19/58 (33%)

Return to query results.
Submit another query.