DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cato and LOC100493338

DIOPT Version :10

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_002937913.2 Gene:LOC100493338 / 100493338 XenbaseID:XB-GENE-29081655 Length:206 Species:Xenopus tropicalis


Alignment Length:88 Identity:37/88 - (42%)
Similarity:51/88 - (57%) Gaps:7/88 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 GSDGRKSSPEQTNLSPTVQKRR-------RQAANARERKRMNGLNAAFERLREVVPAPSIDQKLS 140
            |.:|...||.:.:.....:|.|       |||||||||.|.:.:|.||..||.::|....|:|||
 Frog    75 GDEGGCCSPAEESRGKRKRKSRLSGVSKQRQAANARERDRTHSVNTAFTALRTLIPTEPADRKLS 139

  Fly   141 KFETLQMAQSYILALCDLLNNGD 163
            |.|||::|.|||..|.::|..|:
 Frog   140 KIETLRLASSYISHLANILLLGE 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 bHLH_TS_ATOH1_like 104..159 CDD:381436 30/61 (49%)
LOC100493338XP_002937913.2 bHLH_TS_scleraxis_like 104..158 CDD:381471 29/53 (55%)

Return to query results.
Submit another query.