DRSC/TRiP Functional Genomics Resources

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Protein Alignment cato and ascl1

DIOPT Version :10

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_002944648.3 Gene:ascl1 / 100490701 XenbaseID:XB-GENE-1032967 Length:199 Species:Xenopus tropicalis


Alignment Length:150 Identity:52/150 - (34%)
Similarity:68/150 - (45%) Gaps:27/150 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 VSGQDYGQGAFLSPEWQFLDAAGGTQTELGPIMEAQGQHTQPQTKRRSNS-----------FTGS 84
            :|||.. |..||.|...|     ....:|.|..|.:....:...::||:|           |||.
 Frog    13 LSGQQQ-QQHFLQPACFF-----PQNVQLSPAEEHEAAKPKQIKRQRSSSPELMRCKRRLNFTGF 71

  Fly    85 DGRKSSPEQTNLSPTVQKRRRQAANARERKRMNGLNAAFERLREVVPAPSIDQKLSKFETLQMAQ 149
            .  .|.|:|   .|....||    |.|||.|:..:|..|..|||.||..:.::|:||.|||:.|.
 Frog    72 G--YSLPQQ---QPAAVARR----NERERNRVKLVNLGFATLREHVPNGAANKKMSKVETLRSAV 127

  Fly   150 SYILALCDLLNNGDVEVDAA 169
            .||.||..||:..|. |.||
 Frog   128 EYIRALQQLLDEHDA-VSAA 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 bHLH_TS_ATOH1_like 104..159 CDD:381436 24/54 (44%)
ascl1XP_002944648.3 bHLH_TS_ASCL1_Mash1 78..148 CDD:381585 32/76 (42%)

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