DRSC/TRiP Functional Genomics Resources

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Protein Alignment cato and atoh1

DIOPT Version :9

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_004911142.1 Gene:atoh1 / 100488309 XenbaseID:XB-GENE-6452084 Length:260 Species:Xenopus tropicalis


Alignment Length:147 Identity:56/147 - (38%)
Similarity:80/147 - (54%) Gaps:21/147 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PPVSGQDYGQGAFLSPEWQFLDAAG------------GTQTELGPIMEAQGQHTQPQTKRRSNSF 81
            |.:.|:||...:.....|  |.||.            |...::..:.:.:|...:...:...:..
 Frog    22 PGLLGRDYLLDSSDPRSW--LSAASLQSRPEYVLHPQGRAHKVRELCKLKGLQDEEDEEEEEDDE 84

  Fly    82 TGSDG---RKSSPEQTNLSP-TVQKRRRQAANARERKRMNGLNAAFERLREVVPAPSIDQKLSKF 142
            ..|:|   .:..|.:   .| .|||:||.|||||||:||:|||.||::||.|:|:.:.|:||||:
 Frog    85 ETSEGLCRHRGGPGK---GPGGVQKQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKY 146

  Fly   143 ETLQMAQSYILALCDLL 159
            |||||||.||.||.|||
 Frog   147 ETLQMAQIYINALSDLL 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 HLH 104..155 CDD:278439 34/50 (68%)
atoh1XP_004911142.1 bHLH_TS_ATOH1 103..166 CDD:381556 42/61 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4691
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.910

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