DRSC/TRiP Functional Genomics Resources

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Protein Alignment cato and atoh1

DIOPT Version :10

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_004911142.1 Gene:atoh1 / 100488309 XenbaseID:XB-GENE-6452084 Length:260 Species:Xenopus tropicalis


Alignment Length:147 Identity:56/147 - (38%)
Similarity:80/147 - (54%) Gaps:21/147 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 PPVSGQDYGQGAFLSPEWQFLDAAG------------GTQTELGPIMEAQGQHTQPQTKRRSNSF 81
            |.:.|:||...:.....|  |.||.            |...::..:.:.:|...:...:...:..
 Frog    22 PGLLGRDYLLDSSDPRSW--LSAASLQSRPEYVLHPQGRAHKVRELCKLKGLQDEEDEEEEEDDE 84

  Fly    82 TGSDG---RKSSPEQTNLSP-TVQKRRRQAANARERKRMNGLNAAFERLREVVPAPSIDQKLSKF 142
            ..|:|   .:..|.:   .| .|||:||.|||||||:||:|||.||::||.|:|:.:.|:||||:
 Frog    85 ETSEGLCRHRGGPGK---GPGGVQKQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKY 146

  Fly   143 ETLQMAQSYILALCDLL 159
            |||||||.||.||.|||
 Frog   147 ETLQMAQIYINALSDLL 163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 bHLH_TS_ATOH1_like 104..159 CDD:381436 37/54 (69%)
atoh1XP_004911142.1 bHLH_TS_ATOH1 103..166 CDD:381556 42/61 (69%)

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