DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment cato and lyl1

DIOPT Version :10

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:XP_068077959.2 Gene:lyl1 / 100333113 ZFINID:ZDB-GENE-090807-1 Length:321 Species:Danio rerio


Alignment Length:174 Identity:49/174 - (28%)
Similarity:70/174 - (40%) Gaps:47/174 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 LPPVSGQDYG--QGAFLSPEWQFLDAAGGTQTELGPIMEAQGQHTQPQTKRRSNSFTGSDGRKSS 90
            |||...|.:.  ..:||.|...|                  |..:..:.|||.::....:.|...
Zfish   143 LPPAFLQTHPFISSSFLMPPAGF------------------GIFSNARMKRRPSTHFEVEIRSDG 189

  Fly    91 PEQTNLSPTVQKRRRQAANARERKRMNGLNAAFERLREVVPAPSIDQKLSKFETLQMAQSYILAL 155
            |.|       :..||...|:|||.|...:|.||..||:::|....|:||||.|.|::|..||..|
Zfish   190 PPQ-------KLARRVFTNSRERWRQQNVNGAFSELRKLIPTHPPDRKLSKNEILRLAMKYIDFL 247

  Fly   156 CDLLNN----GDVEVDAAAYT----------------IFGDSDS 179
            ..|||:    .:....|.|:|                .:||:||
Zfish   248 EQLLNDQSQPEETGQHAHAHTPSTHSLLLLTASSGSSCYGDTDS 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 bHLH_TS_ATOH1_like 104..159 CDD:381436 24/54 (44%)
lyl1XP_068077959.2 None

Return to query results.
Submit another query.