DRSC/TRiP Functional Genomics Resources

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Protein Alignment cato and neurog1

DIOPT Version :10

Sequence 1:NP_477344.1 Gene:cato / 36813 FlyBaseID:FBgn0024249 Length:189 Species:Drosophila melanogaster
Sequence 2:NP_001116895.1 Gene:neurog1 / 100144651 XenbaseID:XB-GENE-491452 Length:227 Species:Xenopus tropicalis


Alignment Length:159 Identity:47/159 - (29%)
Similarity:69/159 - (43%) Gaps:39/159 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YSSASEEDGSSQYLGSPNYNLTQLPPVSGQDYGQGAFLSPEWQFLDAAGGTQTELGPIMEAQGQH 69
            |.|:.|||..|....||..:.....|..          :||                    :.|.
 Frog    16 YCSSDEEDSFSMQSASPFSSEHMSSPAQ----------TPE--------------------KCQE 50

  Fly    70 TQPQTKRRSNSFTGSDGRKSSPEQTNLSPTVQKRRRQAANARERKRMNGLNAAFERLREVVPAPS 134
            .:.:.|:|..|...:|.         :..|::|.||..||.|||.||:.||:|.:.||.::|:..
 Frog    51 EKDKRKKRVRSRVKNDA---------VLHTIKKTRRVKANDRERNRMHNLNSALDELRGILPSFP 106

  Fly   135 IDQKLSKFETLQMAQSYILALCDLLNNGD 163
            .|.||:|.|||::|.:||.||.:.|...|
 Frog   107 DDTKLTKIETLRLAHNYIWALSETLRLAD 135

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
catoNP_477344.1 bHLH_TS_ATOH1_like 104..159 CDD:381436 27/54 (50%)
neurog1NP_001116895.1 bHLH_TS_NGN1_NeuroD3 60..136 CDD:381559 33/85 (39%)

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