DRSC/TRiP Functional Genomics Resources

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Protein Alignment Khc and KAR3

DIOPT Version :9

Sequence 1:NP_476590.1 Gene:Khc / 36810 FlyBaseID:FBgn0001308 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_015467.1 Gene:KAR3 / 856263 SGDID:S000006345 Length:729 Species:Saccharomyces cerevisiae


Alignment Length:354 Identity:125/354 - (35%)
Similarity:189/354 - (53%) Gaps:42/354 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SIKVVCRFRP--------------LNDSEEKAG--SKFVVKFPNNVEENCISIAGKVYLFDKVFK 60
            :|:|.||.||              :|:.::.:|  |..|.|..|..:.:       .:.|||:|.
Yeast   386 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVH-------EFKFDKIFD 443

  Fly    61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNH 125
            ...:...|:.|..: :|...|.|||..|||||||.||||.||... ||    ||||..::.|||.
Yeast   444 QQDTNVDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNP-GD----GIIPSTISHIFNW 502

  Fly   126 IYAMEV-NLEFHIKVSYYEIYMDKIRDLL---DVSKVNLSV-------HEDKNRVPYVKGATERF 179
            |..::. ..::.:...:.|||.:.|.|||   :.:|.:.|:       |:.:.:...:...|...
Yeast   503 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCK 567

  Fly   180 VSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEK 244
            :.|.|.|..::::....|..|.|..|||||||||:|:|::...|.:......|.|.||||||||:
Yeast   568 LESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSER 632

  Fly   245 VSKTGAEGTVLDEAKNINKSLSALGNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIV 307
            ::.:...|..|.|.:|||||||.||:||.||.  |..|.|||:|:||||.:||.||.|:::|.:.
Yeast   633 INVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMF 697

  Fly   308 ICCSPASFNESETKSTLDFGRRAKTVKNV 336
            :..||:|.:.:||.::|.|..:..:.:.|
Yeast   698 VNISPSSSHINETLNSLRFASKVNSTRLV 726

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
KhcNP_476590.1 KISc_KHC_KIF5 10..333 CDD:276820 124/349 (36%)
KISc 12..340 CDD:214526 125/354 (35%)
Apolipoprotein 595..744 CDD:279749