DRSC/TRiP Functional Genomics Resources

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Protein Alignment Khc and kif3cb

DIOPT Version :9

Sequence 1:NP_476590.1 Gene:Khc / 36810 FlyBaseID:FBgn0001308 Length:975 Species:Drosophila melanogaster
Sequence 2:NP_001017849.2 Gene:kif3cb / 550547 ZFINID:ZDB-GENE-080709-4 Length:759 Species:Danio rerio


Alignment Length:626 Identity:206/626 - (32%)
Similarity:321/626 - (51%) Gaps:103/626 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG--------KVYLFDKVFKPNASQEK 67
            :::|||.|.||||..||....:.:|:.  :|....:|:..        |.:.||.|:..::.|.:
Zfish    20 EAVKVVVRCRPLNKKEEAMNQERIVEV--DVRLGQVSVRNPKSSGSLVKSFTFDAVYDVSSKQNE 82

  Fly    68 VYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVN 132
            :|:.|.|.::..||.|:||||||||||.:|||:|||||..|...:|:||.....||..| :...|
Zfish    83 LYDYACKPLIDSVLLGFNGTIFAYGQTGTGKTYTMEGVPTDPETRGVIPNSFQHIFTQI-SRSQN 146

  Fly   133 LEFHIKVSYYEIYMDKIRDLL--DVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKS 195
            .::.::|||.|||.::|||||  |.:| .|.:.|:.....|||..:.....:.:::..|:..|..
Zfish   147 QQYLVRVSYIEIYQEEIRDLLCKDNNK-KLELKENPELGVYVKDLSCVVTKNIKEIEHVMNLGNQ 210

  Fly   196 NRHIAVTNMNEHSSRSHSVFLINVK--QENLENQKKLS-GKLYLVDLAGSEKVSKTGAEGTVLDE 257
            :|.:..|.|||.|||||::|:|.::  :..::.:..:. |||.:|||||||:.||||.:|....|
Zfish   211 SRSVGFTKMNERSSRSHAIFVITIECSEMGIDGEDHIRVGKLNMVDLAGSERQSKTGVQGRRFKE 275

  Fly   258 AKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKS 322
            |..||.||||||||||||.||..||:|||||||||:||:||||||:|.:|....|||....||.:
Zfish   276 AAKINLSLSALGNVISALVDGKSTHVPYRDSKLTRLLQDSLGGNAKTVMVATVGPASCYYDETLT 340

  Fly   323 TLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARLKGKVEKLEIELARWRAGETVKAEEQ 387
            ||.:..|||.:||...:||: ..:...|.::   |:.||||.::|:..: ||:.|..:   ....
Zfish   341 TLRYANRAKNIKNKPKINED-PKDALLREFQ---EEIARLKAQLEERGM-LAKERRRQ---KRNS 397

  Fly   388 INMEDLM---EASTPNL-EVEAAQTAAAEAA------LAAQRTALANMSASVA-----VNEQARL 437
            :.|:..|   |..||.: |||..:|...|:.      ....:|: ||....::     |||:.:.
Zfish   398 LRMKRSMSSGEVETPRIGEVEVVETVREESVEDYWWKQQMAKTS-ANYKPDISRKLGMVNEKVKT 461

  Fly   438 ATECERLYQQLDDKDEE------------------INQQSQYAEQLKEQVMEQEELIANARREYE 484
            ..|..:..|.:::..|:                  .|:|.:..|..:.::.||:      |:|  
Zfish   462 VEELLKEQQAMENMIEKYKAMESKLLVGGKNIIDHTNEQQKMLELTRLEIAEQD------RKE-- 518

  Fly   485 TLQSEMARIQQENESAKEEVKEVLQALEELAVNYDQKSQEIDNKNKDI---------------DA 534
               .||.::..|.:....|:||....|:          ||::.|.|.:               |.
Zfish   519 ---REMQQLMFEQDEETIELKETFSTLQ----------QEVEFKTKKLRKFYSKLQLVRSEIGDI 570

  Fly   535 LNEELQQKQSVFNAASTELQQLKDMSSHQKKRITEMLTNLL 575
            :||.:..:|        ||:|..:..:.:.|....::.|.:
Zfish   571 INEHVTMRQ--------ELEQTMNELTREMKFKNLIIENFI 603

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KhcNP_476590.1 KISc_KHC_KIF5 10..333 CDD:276820 146/334 (44%)
KISc 12..340 CDD:214526 148/340 (44%)
Apolipoprotein 595..744 CDD:279749
kif3cbNP_001017849.2 KISc_KIF3 20..351 CDD:276822 146/334 (44%)
KISc 21..358 CDD:214526 148/340 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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