DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CngA and SKOR

DIOPT Version :9

Sequence 1:NP_001188960.1 Gene:CngA / 36806 FlyBaseID:FBgn0261612 Length:840 Species:Drosophila melanogaster
Sequence 2:NP_186934.1 Gene:SKOR / 821052 AraportID:AT3G02850 Length:828 Species:Arabidopsis thaliana


Alignment Length:586 Identity:125/586 - (21%)
Similarity:244/586 - (41%) Gaps:115/586 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 VDPTLQSHYRWLAIVSLAVLYNIIFVVGRAVFWEINKSAPAFWYTLDYLCDFIYLLDTLVHMHEG 339
            |.|..:.:..|...:.:..||:..|......|:   :..|...:.||......:|:|.::.....
plant    75 VHPDNRWYKAWTMFILIWALYSSFFTPLEFGFF---RGLPENLFILDIAGQIAFLVDIVLTFFVA 136

  Fly   340 FLD----QGLLVRDAFRLRRHYFHTKGWYLDVLSMLPTDLAYIWWPPETCSSLYLPCPVIVRLNR 400
            :.|    :.:..|.:..||   :....:.:|:|:.:|.|:.| ....|.....||      .|.|
plant   137 YRDSRTYRMIYKRSSIALR---YLKSTFIIDLLACMPWDIIY-KAAGEKEEVRYL------LLIR 191

  Fly   401 LLRINRLWEWFDRTETATGYPNAF-RICKVVLAILVLIHWNACMYFAISYEIGFSSD--SWV--- 459
            |.|::|:..:|.:.|........| ||.|::...|...|..||:::.::..:..|.:  :|:   
plant   192 LYRVHRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGSL 256

  Fly   460 ----YNLNGTRNNTLQRQYIYSFYWSTLTLTTIGETPTPENDV------EYLFVVADFLAGVLIF 514
                |:.:..|...|..:|..|.|::.:|:.|:|     ..|:      |.:|.:......:::.
plant   257 KLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVG-----YGDIHAVNMREMIFAMVYISFDMILG 316

  Fly   515 ATIVGNIGSMISNMNVARVE-FQNRMDGVKQYMAFRRVGHELEARVIRWFAYTWSQSGALDEERV 578
            |.::||:.::|  :..::.| |:::|..:.:||...::|..:..::.......:..|  ..|..|
plant   317 AYLIGNMTALI--VKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESS--YTEAAV 377

  Fly   579 LAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKLKLQVFSPGDYICRKGDVGKEMYI 643
            |..:|..::|:||..:::..:::|.:|.......:..:|::|..:.|.||:.|..:|.|..::|.
plant   378 LQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVVDQLYF 442

  Fly   644 VKRGKLSVVG---DDGITVLATLGAGSVFGEVSVLEIAGNRTGNRRTANVRSLGYSDLFCLAKRD 705
            |..|.|..:|   |....::|.|.....|||:|:|                        |     
plant   443 VCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISIL------------------------C----- 478

  Fly   706 LWETLSDYPEARSTLTQRGCQLLRKDGLLDEQ--------IFADSQRVHDSIEGGIEKLELSVEN 762
                  :.|:..:......|::||    ||:|        .|.|.:|:.:::..|.|.       
plant   479 ------NIPQPYTVRVAELCRILR----LDKQSFMNILEIFFHDGRRILNNLLEGKES------- 526

  Fly   763 LNMRLARLLAEYTASQAKIKQRLAKLEMNGGPGTWRLECEPQSRARSGRLYSLQPKRRPRSRPDA 827
             |:|:.:|.::.|...:|.:..|| |::|             |.|..|.||.|:...|....|:.
plant   527 -NVRIKQLESDITFHISKQEAELA-LKLN-------------SAAFYGDLYQLKSLIRAGGDPNK 576

  Fly   828 T 828
            |
plant   577 T 577

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngANP_001188960.1 Ion_trans 309..529 CDD:278921 50/239 (21%)
Ion_trans_2 <477..527 CDD:285168 12/55 (22%)
Crp 598..>722 CDD:223736 25/126 (20%)
CAP_ED 604..717 CDD:237999 24/115 (21%)
CLZ 720..791 CDD:293134 19/78 (24%)
SKORNP_186934.1 PLN03192 70..827 CDD:215625 125/586 (21%)
ANK repeat 580..611 CDD:293786
ANK repeat 613..644 CDD:293786
ANK repeat 677..708 CDD:293786
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 45 1.000 Domainoid score I4624
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm987
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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