DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CngA and kcnh6b

DIOPT Version :9

Sequence 1:NP_001188960.1 Gene:CngA / 36806 FlyBaseID:FBgn0261612 Length:840 Species:Drosophila melanogaster
Sequence 2:XP_021328182.1 Gene:kcnh6b / 570070 ZFINID:ZDB-GENE-121214-55 Length:893 Species:Danio rerio


Alignment Length:550 Identity:135/550 - (24%)
Similarity:247/550 - (44%) Gaps:85/550 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KRSKPSALRRTLQALRQRLTKRNRPKPPDWFLEKFSNTTN--TDKIGKGCPAMEDAALSSEIRGS 266
            :||.||.....::.:..::.:|.:            |.|.  |..:..|...:.:..|.:.    
Zfish    39 RRSNPSTAHSNIELVTPKVKERTQ------------NVTEKVTQVLSLGADVLPEYKLQAP---- 87

  Fly   267 SVLCNRLSVDPTLQSHYR-----WLAIVSLAVLYNIIFVVGRAVFWEINKSAPAFWYTLDYLC-- 324
                   .|...:..||.     |..::.|.|||..:|....|.|. :|:.......|..|.|  
Zfish    88 -------DVHKWIMLHYSPFKAIWDWVILLLVLYTAVFTPFSAAFL-LNELEDERRQTCGYTCNP 144

  Fly   325 --------DFIYLLDTLVHMHEGFLDQG-LLVRDAFRLRRHYFHTKGW-YLDVLSMLPTD-LAYI 378
                    |.:::.|.::.....:::.. .:|....|:..||.  ||| ::|:::.:|.| |.:.
Zfish   145 LNVVDVIVDVLFIADIVITFRTTYVNHNDEVVTHPKRIAIHYI--KGWFFIDMVAAIPFDLLIFR 207

  Fly   379 WWPPETCSSLYLPCPVIVRLNRLLRINRLWEWFDRTETATGYPNAFRICKVVLAIL-----VLIH 438
            ....||.::|.    .:::..||||:.|:....||   .:.|..|      ||.:|     ::.|
Zfish   208 SGSDETTATLI----GLLKTARLLRLVRVARKLDR---YSEYGAA------VLFLLMCTFGLIAH 259

  Fly   439 WNACMYFAISY-EIGFSSDSWVYNLN---GTRNN--------TLQRQYIYSFYWSTLTLTTIG-E 490
            |.||:::||.: |..:....|:.||.   |.|.|        ::|.:||.:.|::..:||::| .
Zfish   260 WLACIWYAIGHVERPYMKTGWLDNLADQLGKRYNDSDASSGPSIQDKYITALYFTFSSLTSVGFG 324

  Fly   491 TPTPENDVEYLFVVADFLAGVLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFRRVGHEL 555
            ..:|..:.|.:|.:.....|.|::|:|.||:.::|..:......:..:|..||:::.|.::...|
Zfish   325 NVSPNTNSEKMFSICVMFIGSLMYASIFGNVSAIIQRLYSGTTRYHTQMLRVKEFIRFHQIPGGL 389

  Fly   556 EARVIRWFAYTWSQSGALDEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKL 620
            ..|:..:|.:.||.:..:|...||...|:.|:|:|.:.::...|:..::|.......|.||.::.
Zfish   390 RQRLEEYFQHAWSYTNGIDMNAVLKGFPECLQADICLHLNRSLLQNCKVFRGASKACLRALAVRF 454

  Fly   621 KLQVFSPGDYICRKGDVGKEMYIVKRGKLSVVGDDGITVLATLGAGSVFGE-VSVLEIAGNRTGN 684
            :.....|||.:..:||:.:.::.:.||.:.|...:  .|||.||...|||| |::....|:    
Zfish   455 RSTHSPPGDALYHQGDMLRALHFISRGSIQVSQHN--IVLAILGKNDVFGEPVNLYAEPGH---- 513

  Fly   685 RRTANVRSLGYSDLFCLAKRDLWETLSDYP 714
             ..|:|.:|.|.||..:.:.||.|.|..||
Zfish   514 -SNADVTALTYCDLHRIRRDDLLEVLDMYP 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngANP_001188960.1 Ion_trans 309..529 CDD:278921 62/250 (25%)
Ion_trans_2 <477..527 CDD:285168 14/50 (28%)
Crp 598..>722 CDD:223736 35/117 (30%)
CAP_ED 604..717 CDD:237999 34/111 (31%)
CLZ 720..791 CDD:293134
kcnh6bXP_021328182.1 Ion_trans 103..364 CDD:306908 70/276 (25%)
CAP_ED 438..549 CDD:237999 34/111 (31%)
PAT1 <681..>831 CDD:330585
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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