DRSC/TRiP Functional Genomics Resources

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Protein Alignment CngA and Kcnh4

DIOPT Version :9

Sequence 1:NP_001188960.1 Gene:CngA / 36806 FlyBaseID:FBgn0261612 Length:840 Species:Drosophila melanogaster
Sequence 2:NP_446082.2 Gene:Kcnh4 / 114032 RGDID:621415 Length:1016 Species:Rattus norvegicus


Alignment Length:678 Identity:173/678 - (25%)
Similarity:296/678 - (43%) Gaps:141/678 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   204 KRSKPSALRRTLQALR---QRLT-----------KRN----RPKP--PDWFLEKFSNTTNTDKIG 248
            :|...|.||.|.:..|   .|||           |.|    .|||  |::            |: 
  Rat   158 RRGASSRLRSTRRQNRTVLHRLTGHFGRRDQGSVKANSNVFEPKPSVPEY------------KV- 209

  Fly   249 KGCPAMEDAALSSEIRGSSVLCNRLSVDPTLQSHYRWLAIVSLAVLYNIIFVVGRAVFWEINKSA 313
                        :.:.||..|....|:...:     |..::.||..|..:.|.....|...:.:.
  Rat   210 ------------ASVGGSRCLLLHYSIPKAV-----WDGLILLATFYVAVTVPYNVCFAGDDDTP 257

  Fly   314 PAFWYTL--DYLCDFIYLLDTLVHMHEGFLDQ-GLLVRDAFRLRRHYFHTKGW-YLDVLSMLPTD 374
            ....:||  |...:.:::||.:::....::.| |.:|.....:..||..|  | ::|:::.||.|
  Rat   258 ITSRHTLVSDIAVEMLFILDIILNFRTTYVSQSGQVVSAPRSIGLHYLAT--WFFVDLIAALPFD 320

  Fly   375 LAYIWWPPETCSSLYLPCPVIVRLNRLLRINRLWEWFDRTETATGYPNAFRICKVVLAIL----- 434
            |.|::  ..|.:||.    .:::..||||:.||.:..:|....:.         |||.:|     
  Rat   321 LLYVF--NITVTSLV----HLLKTVRLLRLLRLLQKLERYSQCSA---------VVLTLLMSVFA 370

  Fly   435 VLIHWNACMYFAIS-----------YEIGFSSDSWVYNL---------NGTRNNTLQRQ-YIYSF 478
            :|.||.||:::.|.           ::||     |::.|         ||:.....:|. ||.:.
  Rat   371 LLAHWMACVWYVIGRREMEANDPLLWDIG-----WLHELGKRLEEPYVNGSAGGPSRRSAYIAAL 430

  Fly   479 YWSTLTLTTIGETPTPEN-DVEYLFVVADFLAGVLIFATIVGNIGSMISNMNVARVEFQNRMDGV 542
            |::..:||::|......| |.|.:|.:...|.|.|:.|.:.||:.::|..|...|..:.:||..:
  Rat   431 YFTLSSLTSVGFGNVCANTDAEKIFSICTMLIGALMHAVVFGNVTAIIQRMYSRRSLYHSRMKDL 495

  Fly   543 KQYMAFRRVGHELEARVIRWFAYTWSQSGALDEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHD 607
            |.::...|:...|:.|::.:|..||:.:..:|...:|...||:|:|:||:.::.:.| |:.:|..
  Rat   496 KDFIRVHRLPRPLKQRMLEYFQTTWAVNSGIDANELLRDFPDELRADIAMHLNREIL-QLPLFGA 559

  Fly   608 TEPGLLEALVLKLKLQVFSPGDYICRKGDVGKEMYIVKRGKLSVVGDDGITVLATLGAGSVFGEV 672
            ...|.|.||.|.:|....:||:::.|:||..:..|.|..|.|.|:.|:  ||||.||.|.:.| .
  Rat   560 ASRGCLRALSLHIKTSFCAPGEFLLRRGDALQAHYYVCSGSLEVLRDN--TVLAILGKGDLIG-A 621

  Fly   673 SVLEI-----AGNRTGNRRTANVRSLGYSDLFCLAKRDLWETLSDYPEARSTLTQRGCQLLRKDG 732
            .:.|:     ||.....:.:|:|::|.|..|..|:.|.|.|.|..|||..:..         :.|
  Rat   622 DIPELGQEPGAGAGCVLKTSADVKALTYCGLQQLSSRGLAEVLRLYPEYVAAF---------RAG 677

  Fly   733 LLDEQIFADSQRVHDSIEGGIEKLELSVENLNMRLARLLAEYTASQAKIKQRLAKLEMNGGPGTW 797
            |..:..|        ::..|.|...|...:.:.||::..:: |...:..|...:..|..||    
  Rat   678 LPRDLTF--------NLRQGSENNGLGRFSRSPRLSQARSD-TLGSSSDKTLPSITETEGG---- 729

  Fly   798 RLECEPQSRARSGR---LYSLQPKRRPR 822
               .||.:.::..|   |.:|.| .|||
  Rat   730 ---MEPGAGSKPRRPLLLPNLSP-ARPR 753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngANP_001188960.1 Ion_trans 309..529 CDD:278921 62/250 (25%)
Ion_trans_2 <477..527 CDD:285168 15/50 (30%)
Crp 598..>722 CDD:223736 44/128 (34%)
CAP_ED 604..717 CDD:237999 42/117 (36%)
CLZ 720..791 CDD:293134 11/70 (16%)
Kcnh4NP_446082.2 PRK13559 41..>134 CDD:237427
PLN03192 177..>620 CDD:215625 128/497 (26%)
Selectivity filter. /evidence=ECO:0000250 439..444 1/4 (25%)
CAP_ED 578..667 CDD:412130 32/91 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 689..748 14/66 (21%)
PHA03247 <732..1007 CDD:223021 8/23 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 770..869
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 971..1016
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338718
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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