DRSC/TRiP Functional Genomics Resources

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Protein Alignment CngA and kcnh3

DIOPT Version :9

Sequence 1:NP_001188960.1 Gene:CngA / 36806 FlyBaseID:FBgn0261612 Length:840 Species:Drosophila melanogaster
Sequence 2:XP_001919436.3 Gene:kcnh3 / 100006614 ZFINID:ZDB-GENE-070912-23 Length:1192 Species:Danio rerio


Alignment Length:666 Identity:162/666 - (24%)
Similarity:282/666 - (42%) Gaps:164/666 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 EDDDDVDEDDDDEFGASVCEDNPEEAIARADHDTQQKQHYQPNASDSSYVENGRKLIQEPSKRSK 207
            :|..|..:|.|:       |.:||.     |.:|..:.|               |:.:.|...:.
Zfish   131 KDITDNKKDQDE-------EQSPER-----DEETGLEVH---------------KVTRPPGFNAN 168

  Fly   208 PSALRRTLQALRQRLTKRNRPKPPDWFLEKFSNTTNTDKIGKGCPAMEDAALSSEIRGSSVLCNR 272
            ....|..|..|...|.|:::.|      .|.:|....:|     |.:.:..:::..:...:|.:.
Zfish   169 RRRSRAVLYQLSGHLQKQDKSK------LKINNNMFGEK-----PPIPEYKVAAIQKSRFILLHY 222

  Fly   273 LSVDPTLQSHYRWLAI-----VSLAVLYNIIF-VVGRAVFWEINKSAPAFWYTLDYLCDFIYLLD 331
                .|.::.:.||.:     |::.|.||:.| |||........:|.|:   ..|.|.:.:::||
Zfish   223 ----GTFKAGWDWLILLATFYVAVTVPYNVCFTVVGGRDEASTPRSPPS---VSDILVEILFMLD 280

  Fly   332 TLVHMHEGFLD-QGLLVRDAFRLRRHYFHTKGW-YLDVLSMLPTDLAYIWWPPETCSSLYLPCPV 394
            .:::....|:. .|.:|.||..:..||..|  | ::|:::.||.||.|.:     ..|:|....:
Zfish   281 IVLNFRTTFVSTSGQVVYDARSICVHYVTT--WLFVDLIAALPFDLLYAF-----NVSVYFGVHL 338

  Fly   395 I--VRLNRLLRINRLWEWFDRTETATGYPNAFRICKVVLAIL-----VLIHWNACMYFAI----- 447
            :  |||.||||:.:..|.:.:...            |||.:|     :|.||.||:::.|     
Zfish   339 LKTVRLLRLLRLLQKLERYSQYSA------------VVLTLLMSMFALLAHWMACVWYIIGRSEI 391

  Fly   448 ------SYEIGF-----------------------------------SSDSW----------VYN 461
                  |::||:                                   :|..|          |:|
Zfish   392 ENNSPGSWDIGWLHELGKRLGTPYFLSPLASLIPDSLRPTILDGLVVNSSQWNGSDLVAHEPVWN 456

  Fly   462 ---LNGT------------------RNNTLQRQYIYSFYWSTLTLTTIGETPTPEN-DVEYLFVV 504
               ||.|                  ...:::..|:.|.|::..:||::|......| |.|.:|.:
Zfish   457 SSQLNSTGTAPAAPSNAGQTGAVLGGGPSIRSSYVTSLYFALSSLTSVGFGNVSANTDSEKIFSI 521

  Fly   505 ADFLAGVLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFRRVGHELEARVIRWFAYTWSQ 569
            ...|.|.|:.|.:.||:.::|..|...|..:..|...:|.::...|:...|..|::..|..|||.
Zfish   522 CTMLIGALMHAAVFGNVTAIIQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSV 586

  Fly   570 SGALDEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKLKLQVFSPGDYICRK 634
            :..:|...:|...||:|:|:||:.::.:.| |:.:|.....|.|.:|.|.:|....:||:::.|:
Zfish   587 NNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQ 650

  Fly   635 GDVGKEMYIVKRGKLSVVGDDGITVLATLGAGSVFGEVSVLEIAGNRTGNRRTANVRSLGYSDLF 699
            ||..:.:|.|..|.:.|:.|:  ||||.||.|.:.|..|:.:....:|    .|||::|.|.||.
Zfish   651 GDALQAIYFVCSGSMEVLKDN--TVLAILGKGDLIGSDSLTKEQVIKT----NANVKALTYCDLQ 709

  Fly   700 CLAKRDLWETLSDYPE 715
            .::.:.|.|.|..|||
Zfish   710 YISLKGLREVLRLYPE 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngANP_001188960.1 Ion_trans 309..529 CDD:278921 68/306 (22%)
Ion_trans_2 <477..527 CDD:285168 16/50 (32%)
Crp 598..>722 CDD:223736 41/118 (35%)
CAP_ED 604..717 CDD:237999 39/112 (35%)
CLZ 720..791 CDD:293134
kcnh3XP_001919436.3 PAS 42..133 CDD:238075 0/1 (0%)
PAS_3 42..130 CDD:285623
PLN03192 180..>684 CDD:215625 131/543 (24%)
Ion_trans_2 <489..544 CDD:285168 17/54 (31%)
CAP_ED 620..731 CDD:237999 39/112 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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