DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CngA and kcnh3

DIOPT Version :10

Sequence 1:NP_001188960.1 Gene:CngA / 36806 FlyBaseID:FBgn0261612 Length:840 Species:Drosophila melanogaster
Sequence 2:XP_001919436.3 Gene:kcnh3 / 100006614 ZFINID:ZDB-GENE-070912-23 Length:1192 Species:Danio rerio


Alignment Length:666 Identity:162/666 - (24%)
Similarity:282/666 - (42%) Gaps:164/666 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 EDDDDVDEDDDDEFGASVCEDNPEEAIARADHDTQQKQHYQPNASDSSYVENGRKLIQEPSKRSK 207
            :|..|..:|.|:       |.:||.     |.:|..:.|               |:.:.|...:.
Zfish   131 KDITDNKKDQDE-------EQSPER-----DEETGLEVH---------------KVTRPPGFNAN 168

  Fly   208 PSALRRTLQALRQRLTKRNRPKPPDWFLEKFSNTTNTDKIGKGCPAMEDAALSSEIRGSSVLCNR 272
            ....|..|..|...|.|:::.|      .|.:|....:|     |.:.:..:::..:...:|.:.
Zfish   169 RRRSRAVLYQLSGHLQKQDKSK------LKINNNMFGEK-----PPIPEYKVAAIQKSRFILLHY 222

  Fly   273 LSVDPTLQSHYRWLAI-----VSLAVLYNIIF-VVGRAVFWEINKSAPAFWYTLDYLCDFIYLLD 331
                .|.::.:.||.:     |::.|.||:.| |||........:|.|:   ..|.|.:.:::||
Zfish   223 ----GTFKAGWDWLILLATFYVAVTVPYNVCFTVVGGRDEASTPRSPPS---VSDILVEILFMLD 280

  Fly   332 TLVHMHEGFLD-QGLLVRDAFRLRRHYFHTKGW-YLDVLSMLPTDLAYIWWPPETCSSLYLPCPV 394
            .:::....|:. .|.:|.||..:..||..|  | ::|:::.||.||.|.:     ..|:|....:
Zfish   281 IVLNFRTTFVSTSGQVVYDARSICVHYVTT--WLFVDLIAALPFDLLYAF-----NVSVYFGVHL 338

  Fly   395 I--VRLNRLLRINRLWEWFDRTETATGYPNAFRICKVVLAIL-----VLIHWNACMYFAI----- 447
            :  |||.||||:.:..|.:.:...            |||.:|     :|.||.||:::.|     
Zfish   339 LKTVRLLRLLRLLQKLERYSQYSA------------VVLTLLMSMFALLAHWMACVWYIIGRSEI 391

  Fly   448 ------SYEIGF-----------------------------------SSDSW----------VYN 461
                  |::||:                                   :|..|          |:|
Zfish   392 ENNSPGSWDIGWLHELGKRLGTPYFLSPLASLIPDSLRPTILDGLVVNSSQWNGSDLVAHEPVWN 456

  Fly   462 ---LNGT------------------RNNTLQRQYIYSFYWSTLTLTTIGETPTPEN-DVEYLFVV 504
               ||.|                  ...:::..|:.|.|::..:||::|......| |.|.:|.:
Zfish   457 SSQLNSTGTAPAAPSNAGQTGAVLGGGPSIRSSYVTSLYFALSSLTSVGFGNVSANTDSEKIFSI 521

  Fly   505 ADFLAGVLIFATIVGNIGSMISNMNVARVEFQNRMDGVKQYMAFRRVGHELEARVIRWFAYTWSQ 569
            ...|.|.|:.|.:.||:.::|..|...|..:..|...:|.::...|:...|..|::..|..|||.
Zfish   522 CTMLIGALMHAAVFGNVTAIIQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSV 586

  Fly   570 SGALDEERVLAALPDKLKAEIAIQVHMDTLKQVRIFHDTEPGLLEALVLKLKLQVFSPGDYICRK 634
            :..:|...:|...||:|:|:||:.::.:.| |:.:|.....|.|.:|.|.:|....:||:::.|:
Zfish   587 NNGIDVSELLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQ 650

  Fly   635 GDVGKEMYIVKRGKLSVVGDDGITVLATLGAGSVFGEVSVLEIAGNRTGNRRTANVRSLGYSDLF 699
            ||..:.:|.|..|.:.|:.|:  ||||.||.|.:.|..|:.:....:|    .|||::|.|.||.
Zfish   651 GDALQAIYFVCSGSMEVLKDN--TVLAILGKGDLIGSDSLTKEQVIKT----NANVKALTYCDLQ 709

  Fly   700 CLAKRDLWETLSDYPE 715
            .::.:.|.|.|..|||
Zfish   710 YISLKGLREVLRLYPE 725

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CngANP_001188960.1 Ion_trans 282..529 CDD:459842 78/339 (23%)
CAP_ED 604..717 CDD:237999 39/112 (35%)
CLZ 720..790 CDD:465160
kcnh3XP_001919436.3 PAS_9 41..135 CDD:463873 1/3 (33%)
PLN03192 180..>684 CDD:215625 131/543 (24%)
CAP_ED 620..731 CDD:237999 39/112 (35%)
Atrophin-1 <973..>1164 CDD:460830
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.