DRSC/TRiP Functional Genomics Resources

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Protein Alignment krimp and Tdrd5

DIOPT Version :10

Sequence 1:NP_611103.2 Gene:krimp / 36804 FlyBaseID:FBgn0034098 Length:746 Species:Drosophila melanogaster
Sequence 2:XP_006250099.1 Gene:Tdrd5 / 289129 RGDID:1307078 Length:1046 Species:Rattus norvegicus


Alignment Length:648 Identity:124/648 - (19%)
Similarity:209/648 - (32%) Gaps:239/648 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 KLQGNLRSYQTEMHQIHKELTEKLSHAD----LLYRSLIPLHDHLVAS-LSEVNAHVMKLNVQLH 78
            |.||   ||.|.........::.:|:.:    :|....||:.:.:.|| ||    |..||| ||.
  Rat   219 KQQG---SYSTGFPVTKTRFSQPISNMEPPKQVLSMEKIPMFNTVEASRLS----HTEKLN-QLE 275

  Fly    79 INRQSV--RLG-------DYEYYEKSIDNPYSSIRSGLQAIEKPGCAEAICQSSKPAFVECLPSS 134
            ...:||  ::|       |.::..|.:   .|....||...:..|..|.:.:             
  Rat   276 STFKSVIAQIGPGGTVDPDLKHKIKFV---VSKFPQGLFISKLLGEFELVFK------------- 324

  Fly   135 TSEEVPVVAVQEASSTNQLDAIS-VVNENLSEER------DATPQPLAVSKNMEETMPSNPFHEQ 192
              |::....:...:.|..:.|:| ::....|||:      ||..:||         :|:.|... 
  Rat   325 --EQLSPKQLGFLNVTELVGALSDILRVEFSEEKQDLLVFDADLRPL---------LPAGPLSS- 377

  Fly   193 LEGSLEEIPVGSKIVVETEKANNPVRSEASAPATSDNQ---SLLAAKQGTQTIGTGICNKISKST 254
                     |.:..:|:.:|     |.||:|.|:|.::   |.:|.|:.|.........:..:..
  Rat   378 ---------VRNSCLVQPDK-----RIEANAWASSPSRNSLSTVAVKKTTWDCPLKNHKEAEQKA 428

  Fly   255 INMPN----NWQLENPTEVTAASIEKVNK--LPKSPRNRFL--LPP------------------- 292
            ...||    ..||:..|..:..|:...|.  .|.:.|.:.|  |||                   
  Rat   429 YKKPNLVVKPLQLQVETNKSQLSLSMANHDIPPDAVRAKKLCRLPPLDTSTLVGVFVEYIISPSQ 493

  Fly   293 -------KGGTE-------TTRRDIYNQILKDMAAFPENTIVTAVLASVDVTDNCAYVAKWDESS 343
                   :..:|       ..||...||::.|....||..|....|..|.::::     ||    
  Rat   494 FYVRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPEYFIQPGHLCCVRISED-----KW---- 549

  Fly   344 DRIKKVLQRQLPLQELDQL-PDYGDIFAVLDSINNIITRITINSSSAGGGYDAYLIDFGEHIHFD 407
             ..:.::.|.|..:|::.. ||:|:|.             |:..||               :.| 
  Rat   550 -WYRVIIHRILGKKEVEVFYPDFGNIG-------------TVQKSS---------------LRF- 584

  Fly   408 GNETIFKLPDDIKRLPAQAIRCDL--------------------------------------IN- 433
                   |.....:||||||.|.|                                      :| 
  Rat   585 -------LKCCYTKLPAQAIPCSLAWVRPAEEHWTSKAILHFQKLCGLKPLVGVVDEYIDGILNI 642

  Fly   434 --CDI-ANMHCFVNTYIKIRVH-----EN----------------NNSTLVAEPVIDRLSRPTKT 474
              ||. :|...:.:..::...|     ||                |:|....:.|:..|..|.:.
  Rat   643 FLCDTSSNEDVYFHHVLRTEGHAIVCRENAPSKGFRDFNPPALYTNSSAAPGDMVLTELGHPAQQ 707

  Fly   475 NTTKYPAGITEDDMAMLNE--------------IDESTSDPLKAVLGFRPKDEQRICRHYDPK 523
            :.......|.:.....:|:              :.:|...|||.......:.:..|.:..|||
  Rat   708 HYLNEDGEILQQPQQDINDEKSISHLKSVSEELLKDSKLGPLKTRESCEEEPQWSILKPKDPK 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
krimpNP_611103.2 TUDOR 576..679 CDD:425754
Tudor_dTUD-like 618..663 CDD:410450
Tdrd5XP_006250099.1 LOTUS_1_TDRD5 4..98 CDD:193599
LOTUS_2_TDRD5 127..196 CDD:193589
LOTUS_3_TDRD5 292..365 CDD:193590 15/90 (17%)
Tudor_TDRD5 484..601 CDD:410490 32/162 (20%)
Blue background indicates that the domain is not in the aligned region.

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