DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment krimp and tdrd6

DIOPT Version :9

Sequence 1:NP_611103.2 Gene:krimp / 36804 FlyBaseID:FBgn0034098 Length:746 Species:Drosophila melanogaster
Sequence 2:XP_031758870.1 Gene:tdrd6 / 105948404 XenbaseID:XB-GENE-5969988 Length:2499 Species:Xenopus tropicalis


Alignment Length:846 Identity:160/846 - (18%)
Similarity:274/846 - (32%) Gaps:271/846 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 IMKLFDSNMHKLQGNLRSYQTEMHQIHKELTEKLSHADLL------------------------- 48
            :.|..|...::...|.....|::..:....||||:..:||                         
 Frog  1013 LAKFSDQQWYRCFTNFNKNSTDVFFVDYGNTEKLTKEELLPIPSDAYELLHFPMQAIKCSLSDIP 1077

  Fly    49 ----------YRSLI---PLHDHLVASLSEVNAHVMKLNVQLHINRQSV------RLGDYEYYEK 94
                      :.:||   ||...:||..::     .||.|:|:...|.:      :||       
 Frog  1078 DTIPREVVLWFENLILDKPLKALIVAKETD-----GKLIVELYDGSQQINSSIKAKLG------- 1130

  Fly    95 SIDNP-------YSSIRSGLQAIEKPGCAEAIC----QSSKPAFVECLPSSTSEEVPVVAVQEAS 148
             :.||       .:..|..|..::|.|..::..    |.||  |...|.:.:          :..
 Frog  1131 -LKNPRTEGYFGNAEKRHQLNDLDKGGRPDSAFKLYNQGSK--FSSDLDNHS----------QNG 1182

  Fly   149 STNQLDAISVVNENLSEERD--------ATPQP-------LAVSKNMEET----MPSNPFHEQLE 194
            .|:|..|..|     ::|||        .|.:|       .:|.||:.::    ..:..|..:..
 Frog  1183 FTHQKSASFV-----AKERDQFEQKPNLRTSRPYIQDREVYSVRKNISQSGYAPHKTGEFRSKDR 1242

  Fly   195 GSLEEIP---------VGSKIVVETEKANNPVRSEASAPATSDNQSLLAAKQGTQTIGTGICNKI 250
            .:||:.|         .|.::.:....:|:....:.:....|..:.:...||..... .|. |:.
 Frog  1243 EALEQRPNLKTSGMYSQGREVSMSQNGSNSGFPPKKTGGFRSKEREVSEHKQNPDAF-KGY-NQE 1305

  Fly   251 SKSTINMPNNWQLEN--PTEVTAASIEKVNKLPKSPRNRFLLPPKGGTETTRRDIYNQI-----L 308
            ||.:..:.|..|:|.  .:|...:|..|               |:......||..:.:.     |
 Frog  1306 SKMSPQLRNGSQMEASWSSESDRSSEHK---------------PEINASQQRRSTFQECKSIPPL 1355

  Fly   309 KDMAAFPENTIVTAVLASV------DVTDNCAYVAKWDESSDRIKKVLQRQ-LPLQELDQLP-DY 365
            ..::..|:..|.....:||      .::|....:|: |.....|.::|..: .|...||:.. :.
 Frog  1356 TKLSDLPKQNITPGFKSSVYISHTNTLSDFYVQIAQ-DTELSNISEILNNEKKPSDRLDEKDVNL 1419

  Fly   366 GDIFAVLDSINNIITRITINSSSAGGGYDAYLIDFGEHIHFDGNETIFKLPDDIKRLPAQAIRCD 430
            ||:.......:.:..|..|....:.|....| ||:|..:....:: |:|||..:...|..:|.|.
 Frog  1420 GDLICAFFEDDGLYYRAVITEKHSDGLQVQY-IDYGNTLTIPASQ-IYKLPPSLSSAPVMSIFCA 1482

  Fly   431 LINCDIANMHCFVNTYIKIRVHENNNSTLVAEPVIDRLSRPT----------KTNTTKYPAGITE 485
            |..|..|  .|           |.|...|:.     :.|..|          :.|..|:.. |..
 Frog  1483 LDKCTTA--AC-----------EQNMDDLMV-----KFSERTGDLELSCEFVQCNNLKWNV-ILC 1528

  Fly   486 DDMAMLNEIDESTSDPLKAVLGFRPKDEQRICRHYDPKLNGCFKGNNCRFAHEPFAP----NGAT 546
            ||...:|::..|.||||     ..|           |.|            .||...    ||.:
 Frog  1529 DDQGCINDLFISASDPL-----LNP-----------PSL------------EEPDVTSEQLNGVS 1565

  Fly   547 KDVELARALPETIFDTTVHFEIGSIVGILITFINGPTEVYGQFLDGSPPLVW------------- 598
            ..|....||.|.:                        |.|...:| ||...|             
 Frog  1566 HYVWNLPALGERV------------------------EAYASAVD-SPEHFWCQLVTADVDSLAV 1605

  Fly   599 -----DKKDVPENKRTFKSKPRLLDIVLALYS-DGCFYRAQIIDEFPSEYMIFYVDYGNTEFVPL 657
                 .::.|.:.|  |.::..:......:|| |..:|||.:......:..:.:|||||.|.:.|
 Frog  1606 KVQEAGERSVHDGK--FSTEIEVGSPCNVIYSEDNHWYRAAVTKIEADQVTVRFVDYGNEEMLHL 1668

  Fly   658 SCLAPCENVDSFKPHRVFSFHIEGIVRSKNLTHQKTIECIEYLKSKLLNTEMNVHLVQRLPDGFL 722
            ..:.......:..|.:.||..:.|...|:.        |        .|::.|....:.:.:|.|
 Frog  1669 EQVRRLPADLATIPAQAFSCSLAGFNLSEG--------C--------WNSDANTFFYENVTEGLL 1717

  Fly   723 I 723
            :
 Frog  1718 V 1718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
krimpNP_611103.2 TUDOR 568..679 CDD:278965 25/129 (19%)
TUDOR 618..662 CDD:119391 13/44 (30%)
tdrd6XP_031758870.1 Tudor_SF 24..153 CDD:413384
Tudor_TDRD6_rpt2 258..389 CDD:410492
Tudor_SF 497..630 CDD:413384
Tudor_SF 734..863 CDD:413384
Tudor_SF 950..1073 CDD:413384 10/59 (17%)
Tudor_SF 1371..1483 CDD:413384 26/114 (23%)
Tudor_SF 1578..1717 CDD:413384 31/181 (17%)
MDN1 <1950..2492 CDD:227596
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22948
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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