DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lis-1 and pafah1b1b

DIOPT Version :10

Sequence 1:NP_477160.1 Gene:Lis-1 / 36791 FlyBaseID:FBgn0015754 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_958503.1 Gene:pafah1b1b / 394247 ZFINID:ZDB-GENE-040116-3 Length:410 Species:Danio rerio


Alignment Length:411 Identity:291/411 - (70%)
Similarity:362/411 - (88%) Gaps:3/411 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 MVLSQRQREELNQAIADYLGSNGYADSLETFRKEA--DLSTEVEKKFGGLLEKKWTSVIRLQKKV 65
            ||||||||:|||:||||||.||||.::..||:|||  |::.|::|||.|||||||||||||||||
Zfish     1 MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDVNDELDKKFAGLLEKKWTSVIRLQKKV 65

  Fly    66 MELEAKLTEAEKEVIEGAPTKNKRTPGEWIPRPPEKFSLTGHRASITRVIFHPIFALMVSASEDA 130
            ||||:||.||::|:..|.|...||.|.|||||||||::|:|||:.:|||||||:|:|||||||||
Zfish    66 MELESKLNEAKEEITLGGPVGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSLMVSASEDA 130

  Fly   131 TIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHGHDHN 195
            ||::||:|.|::||:||||||||||::||..||||||||||::|||||| |.:|||:||||||||
Zfish   131 TIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDF-QGFECIRTMHGHDHN 194

  Fly   196 VSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSNDQTIR 260
            |||||.:|.||:::|||||:|:|||||||||||||:|||||||||||.:.:|::.|:||||||:|
Zfish   195 VSSVAIMPNGDHIVSASRDKTMKMWEVATGYCVKTFTGHREWVRMVRPNQDGTLLASCSNDQTVR 259

  Fly   261 VWLTNSKDCKVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKTIRIWD 325
            ||:..:|:||.|||:|||.||||:||||:|...|:||.|::|||....||||.||||||||::||
Zfish   260 VWVVATKECKAELREHEHVVECISWAPESAHPTISEATGSENKKSGKPGPFLLSGSRDKTIKMWD 324

  Fly   326 VSVGLCLLTLSGHDNWVRGLAFHPGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFH 390
            :|.|:||:||.||||||||:.|||||:::||.:||||:|:||.:||||||||.||:||.||:|||
Zfish   325 ISTGMCLMTLVGHDNWVRGVLFHPGGRFVVSCADDKTLRIWDYKNKRCMKTLSAHEHFVTSLDFH 389

  Fly   391 KAHPYVISGSVDQTVKVWECR 411
            ||.|||::|||||||||||||
Zfish   390 KASPYVVTGSVDQTVKVWECR 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lis-1NP_477160.1 LisH 9..40 CDD:128913 21/32 (66%)
WD40 100..409 CDD:238121 218/308 (71%)
WD40 repeat 111..148 CDD:293791 26/36 (72%)
WD40 repeat 154..191 CDD:293791 26/36 (72%)
WD40 repeat 196..232 CDD:293791 27/35 (77%)
WD40 repeat 239..274 CDD:293791 19/34 (56%)
WD40 repeat 280..336 CDD:293791 35/55 (64%)
WD40 repeat 342..378 CDD:293791 24/35 (69%)
WD40 repeat 384..408 CDD:293791 18/23 (78%)
pafah1b1bNP_958503.1 LisH 10..34 CDD:462501 15/23 (65%)
WD40 104..408 CDD:238121 216/304 (71%)
WD 1 106..147 28/40 (70%)
WD40 repeat 111..148 CDD:293791 26/36 (72%)
WD 2 148..187 30/39 (77%)
WD40 repeat 154..190 CDD:293791 26/36 (72%)
WD 3 190..229 30/38 (79%)
WD40 repeat 195..231 CDD:293791 27/35 (77%)
WD 4 232..271 24/38 (63%)
WD40 repeat 238..273 CDD:293791 19/34 (56%)
WD 5 274..333 37/58 (64%)
WD40 repeat 279..335 CDD:293791 35/55 (64%)
WD 6 336..377 29/40 (73%)
WD40 repeat 341..377 CDD:293791 24/35 (69%)
WD 7 379..410 24/30 (80%)
WD40 repeat 383..407 CDD:293791 18/23 (78%)

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