DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lis-1 and Wdr5

DIOPT Version :10

Sequence 1:NP_477160.1 Gene:Lis-1 / 36791 FlyBaseID:FBgn0015754 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_001034123.1 Gene:Wdr5 / 362093 RGDID:1305159 Length:334 Species:Rattus norvegicus


Alignment Length:354 Identity:107/354 - (30%)
Similarity:178/354 - (50%) Gaps:33/354 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 MELEAKLTEAEKEVIEGAP----TKNKRTPGEWIPRPPEKFSLTGHRASITRVIFHPIFALMVSA 126
            |..|.|..|.|....:..|    |::|.||.:  |....||:|.||..:::.|.|.|....:.|:
  Rat     1 MATEEKKPETEAARAQPTPSSSATQSKPTPVK--PNYALKFTLAGHTKAVSSVKFSPNGEWLASS 63

  Fly   127 SEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLASCSADLSIKLWDFQQSYECIKTMHG 191
            |.|..|:||....|::|:::.||...:.|||:.:...||.|.|.|.::|:||. .|.:|:||:.|
  Rat    64 SADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKG 127

  Fly   192 HDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYTGHREWVRMVRVHIEGSIFATCSND 256
            |.:.|....|.|..:.::|.|.|.::::|:|.||.|:||...|.:.|..|..:.:||:..:.|.|
  Rat   128 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192

  Fly   257 QTIRVWLTNSKDC-KVELRDHEHTVECIAWAPEAAASAINEAAGADNKKGHHQGPFLASGSRDKT 320
            ...|:|.|.|..| |..:.|....|..:.::|                    .|.::.:.:.|.|
  Rat   193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP--------------------NGKYILAATLDNT 237

  Fly   321 IRIWDVSVGLCLLTLSGHDNWVRGLAFH---PGGKYLVSASDDKTIRVWDLRNKRCMKTLYAHQH 382
            :::||.|.|.||.|.:||.|....:..:   .|||::||.|:|..:.:|:|:.|..::.|..|..
  Rat   238 LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD 302

  Fly   383 FCTSIDFHKAHPYVISGSV--DQTVKVWE 409
            ...|...|.....:.|.::  |:|:|:|:
  Rat   303 VVISTACHPTENIIASAALENDKTIKLWK 331

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lis-1NP_477160.1 LisH 9..40 CDD:128913
WD40 100..409 CDD:238121 95/314 (30%)
WD40 repeat 111..148 CDD:293791 11/36 (31%)
WD40 repeat 154..191 CDD:293791 15/36 (42%)
WD40 repeat 196..232 CDD:293791 13/35 (37%)
WD40 repeat 239..274 CDD:293791 11/35 (31%)
WD40 repeat 280..336 CDD:293791 12/55 (22%)
WD40 repeat 342..378 CDD:293791 10/38 (26%)
WD40 repeat 384..408 CDD:293791 6/25 (24%)
Wdr5NP_001034123.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 9/29 (31%)
WD40 <36..330 CDD:441893 95/314 (30%)
WD 1 43..82 13/38 (34%)
WD40 repeat 48..85 CDD:293791 11/36 (31%)
WD 2 85..126 17/41 (41%)
WD40 repeat 91..127 CDD:293791 15/36 (42%)
WD 3 128..168 14/39 (36%)
WD40 repeat 132..168 CDD:293791 13/35 (37%)
WD 4 169..208 12/38 (32%)
WD40 repeat 175..210 CDD:293791 11/34 (32%)
WD 5 212..253 13/60 (22%)
WD40 repeat 217..253 CDD:293791 12/55 (22%)
WD 6 256..296 11/39 (28%)
WD40 repeat 261..298 CDD:293791 10/36 (28%)
WD 7 299..333 8/33 (24%)
WD40 repeat 304..330 CDD:293791 6/25 (24%)
Blue background indicates that the domain is not in the aligned region.

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