DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lis-1 and wdr-5.1

DIOPT Version :10

Sequence 1:NP_477160.1 Gene:Lis-1 / 36791 FlyBaseID:FBgn0015754 Length:411 Species:Drosophila melanogaster
Sequence 2:NP_497749.1 Gene:wdr-5.1 / 175474 WormBaseID:WBGene00006474 Length:376 Species:Caenorhabditis elegans


Alignment Length:312 Identity:88/312 - (28%)
Similarity:157/312 - (50%) Gaps:27/312 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 SLTGHRASITRVIFHPIFALMVSASEDATIRIWDFETGEYERSLKGHTDSVQDVAFDAQGKLLAS 167
            :|.||..||:...|.|....:.::|.|.|::||:.:....||:|.||...|.|:|:.:..:.:.|
 Worm    82 TLEGHTKSISSAKFSPCGKYLGTSSADKTVKIWNMDHMICERTLTGHKLGVNDIAWSSDSRCVVS 146

  Fly   168 CSADLSIKLWDFQQSYECIKTMHGHDHNVSSVAFVPAGDYVLSASRDRTIKMWEVATGYCVKTYT 232
            .|.|.::|:::...| ...||:.||::.|....|.|....|:|.|.|.::::|:|.||.|:||..
 Worm   147 ASDDKTLKIFEIVTS-RMTKTLKGHNNYVFCCNFNPQSSLVVSGSFDESVRIWDVKTGMCIKTLP 210

  Fly   233 GHREWVRMVRVHIEGSIFATCSNDQTIRVWLTNSKDCKVELRDHEH-TVECIAWAPEAAASAINE 296
            .|.:.|..|..:.:||:.|:.|.|..:|:|.|.:..|...|.|.|: .|..:.::|         
 Worm   211 AHSDPVSAVSFNRDGSLIASGSYDGLVRIWDTANGQCIKTLVDDENPPVAFVKFSP--------- 266

  Fly   297 AAGADNKKGHHQGPFLASGSRDKTIRIWDVSVGLCLLTLSGHDNWVRGLAFH---PGGKYLVSAS 358
                       .|.::.:.:.|.|:::||.|.|..|...:||:|....:..:   .|||:::|.|
 Worm   267 -----------NGKYILASNLDSTLKLWDFSKGKTLKQYTGHENSKYCIFANFSVTGGKWIISGS 320

  Fly   359 DDKTIRVWDLRNKRCMKTLYAHQHFCTSIDFHKAHPYVISGSV--DQTVKVW 408
            :|..|.:|:|:.:..::.|..|.....:.|.|.....:.||::  |..:.:|
 Worm   321 EDCKIYIWNLQTREIVQCLEGHTQPVLASDCHPVQNIIASGALEPDNKIHIW 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lis-1NP_477160.1 LisH 9..40 CDD:128913
WD40 100..409 CDD:238121 88/312 (28%)
WD40 repeat 111..148 CDD:293791 11/36 (31%)
WD40 repeat 154..191 CDD:293791 9/36 (25%)
WD40 repeat 196..232 CDD:293791 14/35 (40%)
WD40 repeat 239..274 CDD:293791 10/34 (29%)
WD40 repeat 280..336 CDD:293791 10/55 (18%)
WD40 repeat 342..378 CDD:293791 9/38 (24%)
WD40 repeat 384..408 CDD:293791 5/25 (20%)
wdr-5.1NP_497749.1 PRK13914 <2..>96 CDD:237555 5/13 (38%)
WD40 79..373 CDD:238121 88/312 (28%)
WD40 repeat 90..127 CDD:293791 11/36 (31%)
WD40 repeat 133..169 CDD:293791 9/36 (25%)
WD40 repeat 174..210 CDD:293791 14/35 (40%)
WD40 repeat 217..252 CDD:293791 10/34 (29%)
WD40 repeat 259..295 CDD:293791 10/55 (18%)
WD40 repeat 303..340 CDD:293791 9/36 (25%)
WD40 repeat 346..372 CDD:293791 5/25 (20%)
Blue background indicates that the domain is not in the aligned region.

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