DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp52F and ptprnb

DIOPT Version :10

Sequence 1:NP_611093.2 Gene:Ptp52F / 36790 FlyBaseID:FBgn0034085 Length:1433 Species:Drosophila melanogaster
Sequence 2:XP_005165924.1 Gene:ptprnb / 564351 ZFINID:ZDB-GENE-100505-1 Length:945 Species:Danio rerio


Alignment Length:309 Identity:97/309 - (31%)
Similarity:148/309 - (47%) Gaps:40/309 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly  1067 AWKRDSGQGIED-PFGNVIAKNFAIFYTEVAKPEKLAREFKEITVVALE---LSYSASELGCHKN 1127
            :|..:..|...| ..|::|   .|.....:...::|.:|::.:.....|   :|.:.||....||
Zfish   643 SWCEEPAQSNMDISTGHMI---LAYMEDHLKNKDRLLKEWEALCSYQAEPSTISAAQSESNIKKN 704

  Fly  1128 RYADIFPYDKNRVIL--DIDAEGSDYINASFIDGH-TRKKEYIATQGPKPESVMDFWRMILQYNV 1189
            |.:|..|||.:||.|  :|:...:||||||.|..| .|...|||||||...::.|||:|:.:...
Zfish   705 RCSDAVPYDHSRVKLKAEINPSRTDYINASTIIEHDPRMPAYIATQGPLSHTISDFWQMVWESGC 769

  Fly  1190 RVIVQVTQFREGNTIKCHEYYPYNVRGLTVTIKSKEVLELYDRTELTVVHD----------KYGL 1244
            .|||.:|...|....:|..|:|            .|...||...|:.:|.:          .:.|
Zfish   770 TVIVMMTALVEDGEKQCDRYWP------------DEGSSLYHIYEVNLVSEHIWCNDFLVRSFYL 822

  Fly  1245 K-------EKVIHYYFKKWPDHGVPEDPMHLIMFVKKVKAEKRPSYSPIVVHCSAGVGRTGTFIG 1302
            |       ..:..::|..||..|:|.....|:.|.:||....|....||:||||.|.|||||:|.
Zfish   823 KNVQTQETRTLTQFHFLSWPAQGIPTSTRPLLDFRRKVNKCYRGRSCPIIVHCSDGTGRTGTYIL 887

  Fly  1303 LDLIMQRL-KSESKINIFETVKKLRFQRMKMVQTQQQYTFLYACTYELV 1350
            :|:::.|: |...:|:|..|::.:|.||..||:|:.|:.|......|.|
Zfish   888 IDMVLNRMAKGVKEIDIAATLEHIRDQRPGMVRTKDQFEFALTAVAEEV 936

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp52FNP_611093.2 FN3 648..749 CDD:238020
PTPc 1100..1345 CDD:214550 89/268 (33%)
ptprnbXP_005165924.1 RESP18 47..>114 CDD:464394
Receptor_IA-2 419..507 CDD:463293
PTP_DSP_cys 659..939 CDD:475123 93/293 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.