DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp52F and Ptprb

DIOPT Version :9

Sequence 1:NP_611093.2 Gene:Ptp52F / 36790 FlyBaseID:FBgn0034085 Length:1433 Species:Drosophila melanogaster
Sequence 2:NP_001359063.1 Gene:Ptprb / 314843 RGDID:1305922 Length:2000 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp52FNP_611093.2 FN3 648..749 CDD:238020
PTPc 1100..1345 CDD:214550
PTPc 1125..1348 CDD:238006
PtprbNP_001359063.1 fn3 113..195 CDD:365830
FN3 204..273 CDD:214495
fn3 292..365 CDD:365830
fn3 394..455 CDD:365830
fn3 470..542 CDD:365830
fn3 645..723 CDD:365830
fn3 733..809 CDD:365830
fn3 822..895 CDD:365830
fn3 909..982 CDD:365830
fn3 1009..1077 CDD:365830
fn3 1088..1161 CDD:365830
fn3 1176..1249 CDD:365830
fn3 1263..1341 CDD:365830
fn3 1357..1436 CDD:365830
PTP_tm 1460..1648 CDD:376280
R-PTPc-B 1734..1961 CDD:350465
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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