DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp52F and ptp-5.2

DIOPT Version :9

Sequence 1:NP_611093.2 Gene:Ptp52F / 36790 FlyBaseID:FBgn0034085 Length:1433 Species:Drosophila melanogaster
Sequence 2:NP_502779.1 Gene:ptp-5.2 / 190372 WormBaseID:WBGene00013304 Length:482 Species:Caenorhabditis elegans


Alignment Length:626 Identity:127/626 - (20%)
Similarity:217/626 - (34%) Gaps:186/626 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   820 GNKQGRMSYTETEMQPQFDYTVEVSVKNRDVEQLSSSVPGSWQSPAGLPTIPSDELIKQMRANVE 884
            |||..:.|                  ||:|.:.|:|:.......|.........:..|..|.|.|
 Worm     6 GNKNTKRS------------------KNKDGKALASTASKDVADPPKQGGTKGSKKPKPSRGNDE 52

  Fly   885 ETSNPTKTAIVRLPADIMTSASGDIKWMALMISQKNCAGVPHLKYDVSSDWPKVLSYQEAGADGT 949
            :...|.            |||.          |:|...|.|  |.|..:..|       |.:.|:
 Worm    53 KGREPE------------TSAQ----------SKKAKKGKP--KRDSKAATP-------ALSPGS 86

  Fly   950 GDCSLEY--QTTEERWHPEPVQRQRRDGEVTSDEEIVFTIGLDKCSEVQKTYCNGPLLPDTDYNV 1012
            .:...::  ||.|:. .|.|:        .||....|.|.|:.            .|||..:...
 Worm    87 REMLSDHKKQTVEDD-PPLPI--------ATSVAGTVTTTGMP------------ALLPAENATQ 130

  Fly  1013 VVRLFTASGYSDAAVLNFKTKAAIKVTLILVSVCSCLLLAFVLGLTVLWVRKRLAWKRDSGQGIE 1077
            .::....||.......|..|...:                              :.|....:|.:
 Worm   131 PLKEVVNSGKKSKGAPNSATATPV------------------------------SHKSTITEGAD 165

  Fly  1078 DPFGNVIAKNF--AIFYTEVAKPEKLAREFKEITVVALELSYSASELGC------HKNRYADIFP 1134
            ...|..:|||:  :|...||.|      ||:::..:.:::     |..|      .|...::.||
 Worm   166 KWVGEDVAKNWMDSIDLAEVKK------EFEKLQSMKVDV-----EKECKTWKANSKYNQSEDFP 219

  Fly  1135 -YDKNRVILDIDAEGSDYINASFIDGHTRKKEYIATQGPKPESVMDFWRMILQ---YNVRVIV-- 1193
             .|.|  :|.::   .||:|.|.::....:..||. |.|..::...||:.:..   .::.|||  
 Worm   220 ALDSN--LLKVE---KDYVNISRVEIPLGRNIYIG-QVPVKDTEETFWKAVFDKRIVSIDVIVGD 278

  Fly  1194 -QVTQFREGNTIKCHEYYPYNVRGLTVTIKSKEVLELYD---RTELTVVHDKYGLKEKVI--HYY 1252
             .:..|.:    |..:|..|.    .:.|.:::|..:.|   |..:.|:  .:|....:|  ...
 Worm   279 EPIEFFPK----KAEDYKNYG----QMWINNRKVEYVSDDVFRFSIEVL--PHGCSNSIICNVTV 333

  Fly  1253 FKKWPDHGVPEDPMHLIMFVKKVKAEKR-----------PSYSPIVVHCSAGVGRTGTFIGLDLI 1306
            ...|....||         ||:..|.|.           |:....:::...|.||.|.|:.|.:.
 Worm   334 ISNWKVDSVP---------VKQAIAIKEAFGLNSYLLKAPADDNAMINSQHGAGRAGYFLALAVA 389

  Fly  1307 MQRLKSESKIN---IFETVKKLRFQRMKMVQTQQQYTFLYACTYELVKHKIPRAALKMDGRPKSV 1368
            :..:  ::|:.   |.:.||.:|.||.:.|.:..||..||......:|.|:.:.|   :|..||.
 Worm   390 VHTI--DTKVAEPCIVDIVKSIRSQRPRAVDSFCQYCSLYISLLYFIKKKVTKPA---EGDKKST 449

  Fly  1369 TVPAIPSPKKVSFPDVDVGSEYVSSAPITDLDDGRPIVQLP 1409
                 |:.|.:....|::..::.:..    |:..:|.|..|
 Worm   450 -----PTNKYLHKKSVEMTKQFTNIL----LEANQPSVMGP 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp52FNP_611093.2 FN3 648..749 CDD:238020
PTPc 1100..1345 CDD:214550 60/276 (22%)
PTPc 1125..1348 CDD:238006 56/248 (23%)
ptp-5.2NP_502779.1 PTPc 185..432 CDD:214550 62/284 (22%)
PTPc_motif 336..432 CDD:214649 26/106 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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