DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp52F and ptp-5.3

DIOPT Version :9

Sequence 1:NP_611093.2 Gene:Ptp52F / 36790 FlyBaseID:FBgn0034085 Length:1433 Species:Drosophila melanogaster
Sequence 2:NP_490769.2 Gene:ptp-5.3 / 171660 WormBaseID:WBGene00021207 Length:483 Species:Caenorhabditis elegans


Alignment Length:326 Identity:74/326 - (22%)
Similarity:131/326 - (40%) Gaps:57/326 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly  1066 LAWKRDSGQGIEDPFGNVIAKNF--AIFYTEVAKPEKLAREFKEITVVALELSYSASELGCH--- 1125
            |:.|.....|.:...|..:|||:  :|...||.|      |:.::....:::     |..|.   
 Worm   155 LSHKSSLTGGADKWVGEAVAKNWMDSIDTAEVKK------EYDKLQSQKIDV-----EKDCKTWK 208

  Fly  1126 ---KNRYADIFP-YDKNRVILDIDAEGSDYINASFIDGHTRKKEYIATQGPKPESVMDFWRMILQ 1186
               |...::.|| .|.|.|.|     |.||:|.|.:|....:..::. |.|...:...||:.:..
 Worm   209 SNPKFNQSEDFPALDSNLVKL-----GKDYVNISLVDVPLGRNVHLG-QAPVTNTEETFWKAVFD 267

  Fly  1187 YNVRVIVQVTQFREGNTIKCHEYYPYNVRGLT----VTIKSKEVLELYD---RTELTVVHDKYGL 1244
               :.|..:.......||   |::|......|    :.|.::.|..:.|   |..:.||  .:|.
 Worm   268 ---KRITHIDLLVGDETI---EFFPKKAEDYTNYGQMWINNRRVEYVNDDVYRFAIEVV--PHGC 324

  Fly  1245 KEKVI--HYYFKKWPDHGVP-------EDPMHLIMFVKKVKAEKRPSYSPIVVHCSAGVGRTGTF 1300
            ...:|  ......|....||       ::.:.|..|:.|..|::.     .::....|.||.|.|
 Worm   325 SNSIICNVTVISNWKVDTVPLKQAIAIKEALGLNYFLLKAPADEH-----AMIVSPRGAGRAGYF 384

  Fly  1301 IGLDLIMQRLKSE-SKINIFETVKKLRFQRMKMVQTQQQYTFLYACTYELVKHKIPRAALKMDGR 1364
            :.|.:.:..:.:: ::..|.:.||.:|.||.:.|.:..||..||......:|.|:.:.| :.|.:
 Worm   385 LALAVAVNTIDTKLAEPCIADIVKSIRSQRPRAVDSFCQYCSLYISLLYFIKKKVTKPA-EGDKK 448

  Fly  1365 P 1365
            |
 Worm   449 P 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp52FNP_611093.2 FN3 648..749 CDD:238020
PTPc 1100..1345 CDD:214550 58/268 (22%)
PTPc 1125..1348 CDD:238006 55/246 (22%)
ptp-5.3NP_490769.2 PTPc 186..433 CDD:214550 60/276 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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