DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp52F and Ptprh

DIOPT Version :9

Sequence 1:NP_611093.2 Gene:Ptp52F / 36790 FlyBaseID:FBgn0034085 Length:1433 Species:Drosophila melanogaster
Sequence 2:NP_001178874.1 Gene:Ptprh / 171125 RGDID:620553 Length:971 Species:Rattus norvegicus


Alignment Length:1182 Identity:272/1182 - (23%)
Similarity:434/1182 - (36%) Gaps:361/1182 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   316 LLTDLQGCDL------------------YTFQVFINENSTAKASQTFTSAEKLVSAVYEPSPT-- 360
            :|..|.||.:                  |.|.|:..::..:.:.||       :.|...|:|.  
  Rat    15 VLLGLCGCSVVRTAGTRVTVDRLAPASSYEFSVWAEKDGVSGSPQT-------LIATTAPNPVRN 72

  Fly   361 -----AYPTQLHWTWFSPQNHPKCVANYSVTLTGPIQRSENKTMNVITEETFAIFDDLDPCGIYL 420
                 ...|.:..:|..|:|.    ::..:|......|.:.:.....|::|....|.|||     
  Rat    73 LRVEGQNTTSISLSWDPPENS----SSQDLTYWAQCIRYDGQNETRHTKDTRVTVDGLDP----- 128

  Fly   421 VEIVPNQLNGSAGTKYQEQSTVGED-------------QPSVIQDPVVEAE-AYSMEVSWKTPEY 471
                        ||.|:....|.:|             .|:.:::..||.: ..|:.:||..|| 
  Rat   129 ------------GTSYECSVRVEKDGVYSTWETKNTTTAPNPVRNLRVEGQNTTSISLSWDPPE- 180

  Fly   472 ADLCIDGYRLSGWMEDDKLVEVEALSITTQNTTVVFDKNLLACQVYIIQIIPYTKENLDGQLRQV 536
                                     :.::|:.|            |..|.|.|..:|        
  Rat   181 -------------------------NSSSQDLT------------YWAQCIRYDGQN-------- 200

  Fly   537 GVETKAAIVDYTKVKLEMKNAGSEFIDLIAFNADYNNSCPTIFALFTCNATTQVRNPYAERYVEG 601
              ||:.  ...|:|.::..:.|:.:...:....|      .:::.:....||...||.....|||
  Rat   201 --ETRH--TKDTRVSVDGLDPGTSYECSVRVEKD------GVYSTWETKNTTTAPNPVRNLRVEG 255

  Fly   602 HSKQGFNASLSP----LSPYATYVCKVILYNVAGPSEP--------VVDA--------------- 639
            .:....:.|..|    .|...||..:.|.|:  |.:|.        .||.               
  Rat   256 QNTTAISLSWDPPENSSSQDLTYWAQCIGYD--GKNETRHTKDTRVTVDGLDPGTSYECSVRVEK 318

  Fly   640 -------DMHTTTYFPEQPESVMLEKSTVSSLLFNWQPPTYTNGPIKYYQAFLMRHEASYFVPAD 697
                   :...||..|....::.:|....:::..:|.||..::.           .:.:|:  |.
  Rat   319 DGVYSTWETKNTTTAPNPVRNLRVEGQNTTAISLSWDPPENSSS-----------QDLTYW--AQ 370

  Fly   698 CAIVEQDTKSETK--GDPSVNFTGLAPAVRYMMQVAAQNDFGMGVYTEPVIGITLPAVSDSVTQL 760
            |  :..|.|:||:  .|..|...||.|...|...|..:.|   |||:        ...:.:.|.:
  Rat   371 C--IGYDGKNETRHTKDTRVTVDGLDPGTSYECSVRVEKD---GVYS--------TWETKNTTTV 422

  Fly   761 TVLTQGPVNNNAVYEANVT---ITWKVPCKSNG-DIEYFQLAFNGTRNNFAPVSFERRVELDTGN 821
            .:....||.|..|...|.|   ::|..|..|:. |:.|:.........|....:.:.||.:|   
  Rat   423 PISAPNPVRNLRVEGQNTTSISLSWDPPENSSSQDLTYWAQCIRYDGQNETRHTKDTRVSVD--- 484

  Fly   822 KQGRMSYTETEMQPQFDYTVEVSVKNRDVEQLSSSVPGSWQSPAGLPTIPSDELIKQMRANVEET 886
                      .:.|...|...|.|:       ...|..:|                       ||
  Rat   485 ----------GLDPGTSYECSVRVE-------KDGVYSTW-----------------------ET 509

  Fly   887 SNPTKT-AIVRLPADIMTSASGDIKWMALMISQKNCAGVPHLKYDVSSDWPKVLSYQEAGADGTG 950
            .|.|.. |.|.:.:.|.||..                      |.:...|               
  Rat   510 KNTTTVPAAVNITSCISTSGG----------------------YGIILTW--------------- 537

  Fly   951 DC-SLEYQTTE----ERWHPEPVQRQRRDGEVTSDEEIVFTIGLDKCSEVQKTYCNGPLLPDTDY 1010
            .| |..|:|.|    .:|       ..::|.:......|    ||             |.|...|
  Rat   538 SCPSGSYETFEVEVGRKW-------SSQNGSLCGKGMTV----LD-------------LEPAQSY 578

  Fly  1011 NVVVRLFTASGYSDAAVLNFKTKAAIKVTLILVSVCSCLLLAFVLGLTVLWVRKRLAWKRDSGQG 1075
            ...|...:.|....:|....:|::...:...:|.:   |||..::||.::::::|    |...|.
  Rat   579 TATVTTVSNSLKVQSAPATCRTESTAVIAGAIVGI---LLLFILVGLLIVFLKRR----RKKQQP 636

  Fly  1076 IEDPF-------GNVIAKNFAIFYTEVAKPEK--LAREFKEI----------TVVALELSYSASE 1121
            .|.|.       |:::||:||....|..|...  .|.|::::          |.:|||       
  Rat   637 KEVPKDLVFRFPGDILAKDFADHVRENEKDSNCGFAEEYQQLALEGQGQSQMTALALE------- 694

  Fly  1122 LGCHKNRYADIFPYDKNRVILD--IDAEGSDYINASFIDGHTRKKEYIATQGPKPESVMDFWRMI 1184
             ...||||.::.|||.:||.|.  .:..|||||||||:.|....||:||||||.|.:|.|||||:
  Rat   695 -NVSKNRYRNVLPYDWSRVPLQPLHEEPGSDYINASFMPGLWSPKEFIATQGPLPHTVSDFWRMV 758

  Fly  1185 LQYNVRVIVQVTQFREGNTIKCHEYYPYNVRGLT-----VTIKSKEVLELYDRTELTVVHDKYGL 1244
            .:.....:|.:....|...:||..|:|.:.:..|     ||:.|:||.|.:....|.:.|.|...
  Rat   759 WEQQSHTLVMLANCMESGQVKCEHYWPLDAQPCTHGQLQVTLVSEEVTENWTVRHLQLFHMKEQQ 823

  Fly  1245 KEKVIHYYFKKWPDHGVPEDPMHLIMFVKKVK--AEKRPSYSPIVVHCSAGVGRTGTFIGLDLIM 1307
            ...|..:::..|||||||..|..|:.|.|.::  .::.....|.:||||||||||||.|.||:::
  Rat   824 TLSVRQFHYVAWPDHGVPYSPDPLLAFQKLLRQWLDQTMDGGPPIVHCSAGVGRTGTLIALDVLL 888

  Fly  1308 QRLKSESKINIFETVKKLRFQRMKMVQTQQQYTFLYACTYELVKHKIPRAALKMDGRPKSVTVPA 1372
            ::|:.|..::.|..|||:|..|..||||:.||.||:.|        |.|:..|.|        ||
  Rat   889 RQLECEGLVDPFSFVKKMRESRPLMVQTEAQYVFLHQC--------ILRSLQKPD--------PA 937

  Fly  1373 IPSPKKVSFPDV 1384
            :|: |:.::.:|
  Rat   938 LPA-KEATYENV 948

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp52FNP_611093.2 FN3 648..749 CDD:238020 23/102 (23%)
PTPc 1100..1345 CDD:214550 101/265 (38%)
PTPc 1125..1348 CDD:238006 96/231 (42%)
PtprhNP_001178874.1 FN3 67..154 CDD:238020 19/107 (18%)
FN3 156..243 CDD:238020 22/142 (15%)
FN3 245..332 CDD:238020 17/88 (19%)
FN3 334..421 CDD:238020 23/112 (21%)
FN3 427..514 CDD:238020 24/129 (19%)
PTPc 670..929 CDD:214550 103/274 (38%)
PTPc 698..928 CDD:238006 96/237 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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