DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp52F and ptprfa

DIOPT Version :10

Sequence 1:NP_611093.2 Gene:Ptp52F / 36790 FlyBaseID:FBgn0034085 Length:1433 Species:Drosophila melanogaster
Sequence 2:XP_068077727.1 Gene:ptprfa / 140819 ZFINID:ZDB-GENE-020107-2 Length:1910 Species:Danio rerio


Alignment Length:1456 Identity:320/1456 - (21%)
Similarity:557/1456 - (38%) Gaps:349/1456 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   128 QPKTTVTSVVATANTIKVTWQTNDRACVESFGITAKATDYTKSFQLLNDKSSQTFV--NLSACLT 190
            :|..::.....||.::.:||.:.:...|..:.|..::......||.::..:|..:.  .||....
Zfish   326 RPPASLIVTETTATSVTLTWDSGNPEPVSYYVIQYRSKISDNGFQEVDGVASTRYSIGGLSPYSE 390

  Fly   191 HTITLDTRNNASVVVDTDATDVDTQYAEPGDLVMNV-TNLASGITM-ITWGDPSEKN-CISNY-- 250
            :...:...||......:...:..|....|....:.| ..:.|..|| :.|..|.|.| .|..|  
Zfish   391 YEFRVMAVNNIGRGPPSGMVETRTSEQAPSSPPLRVQARMLSATTMLVQWEPPEEPNGQIRGYRV 455

  Fly   251 ---------VFKWQRNDCGTDQNQDTTTDVPSTETTNEIDYVTTTPMETTPDTPSD--EVKCE-- 302
                     :..||:::  |:.:..||......:.|..:..:..|.:...|  |||  :||.:  
Zfish   456 YYTSDLHFPLSTWQKHN--TEDSSLTTISGLVPDITYGLRVLAFTSVGDGP--PSDILQVKTQQG 516

  Fly   303 -----------------------WT-------------DVSSDGK-------LREYLLTDLQGCD 324
                                   |.             :..||.|       ...|.:..|:...
Zfish   517 VPAQPTGFEAEAELDTRIMLSWLWPVQDQITKYELTYWEADSDNKHHVIFDPAGSYAIDSLKPDT 581

  Fly   325 LYTFQVFINENSTAKASQ----TFTSAEKLVSAVYEPSPTAYPTQLHW----------TWFSP-- 373
            ||.|       |.|..|:    .:|  :.:.:...:.:|:|.|.::|.          :|.:|  
Zfish   582 LYKF-------SLAARSEMGLGVYT--QPIEARTAQSAPSAPPQEVHLISLSSSSIKVSWVAPPA 637

  Fly   374 -QNHPKCVANYSV---TLTGPIQRSENKTMNVITEETFAIFDDLDPCGIYLV------EIVPNQL 428
             ..|.. :..||:   .::|..| ..::..::..:.:..:.:.|:....|.|      ::.|...
Zfish   638 ASRHGS-IVRYSLAYQAVSGEDQ-ERHEVKDIPADVSSYVLEGLEKWTEYTVWVKAHTDVGPGPE 700

  Fly   429 NGSAGTKYQEQSTVGEDQPSVIQDPVVEAEAYSMEVSWKTP----EYADLCIDGYRL------SG 483
            :||  |:.:.|..|....|..::  |....:.::.||||.|    ::..  |.||::      :|
Zfish   701 SGS--TRIRTQEDVPGAPPRRVE--VDNINSTALRVSWKPPLQQKQHGH--IRGYQVVYSRLENG 759

  Fly   484 WMEDDKLVEVEALSITTQNTTVVFDKNLLACQVYIIQIIPYTKENLDGQLRQVGVETKAAIVDYT 548
            ......::    |.:............||....|.:.:..||.:. ||...:..|.|....|...
Zfish   760 EPRGQPII----LDVALPEAQEAVISGLLPETTYSVTVAAYTTKG-DGARSKAKVVTTTGAVPGK 819

  Fly   549 KVKLEMKNAGSEFI-----------DLIAFNADYNNSCPTIFALFTCNATTQVRNPYAERYVEGH 602
            ...:.....|:..:           :|:.:...|......|:.         ||:   .|..:.|
Zfish   820 PTMIISTTIGNTALIQWQPPKEMVGELMGYRLRYKREEEDIYT---------VRD---FRRTDDH 872

  Fly   603 SKQGFNASLSPLSPYATYVCKVILYNVAGPSEPVVDADMHTTTYFPEQ-PESVMLEKSTVSSLLF 666
                  .:::.|...|||:.|:...|.||..|. ...::.|....|.. |:::.:...|.::...
Zfish   873 ------FTVTGLHKGATYIFKLCAKNRAGNGEE-YSKEISTPEDVPSSYPQNLKVVGLTTTTTKL 930

  Fly   667 NWQPPTY--TNGPIKYYQAFLMRHEASYFVPADCAIVEQDTKS---ETKG--DPSVNFTGLAPAV 724
            .|.||..  .||.|..|                 .:|.:|..|   :|.|  |..:...||.|..
Zfish   931 AWDPPPLPERNGKIVRY-----------------VVVYRDINSHQNQTNGTADTEMTIQGLKPDT 978

  Fly   725 RYMMQVAAQNDFGMGVYTEPVIGITLPAVSDSVTQLTVLTQGP--VNN---NAVYEANVTITWKV 784
            .|.::|.|....|.|            .:|.|:...|:.|..|  ..|   .||.:.:|.:||:|
Zfish   979 TYDIRVRAFTGKGGG------------PISPSIQSRTMSTSMPEFTKNFGVKAVMKTSVLLTWEV 1031

  Fly   785 PCKSNGDIEYFQLAFNGTRNNFAPVSFERRVELDTGNKQGRMSYTETEMQPQFDYTVEVSVKNRD 849
            |......:. |::.:|           ::.||:....|:..:    |.:||..||:..:..:...
Zfish  1032 PETYKSQVP-FKILYN-----------QQSVEVQGDLKRKLI----TRLQPDTDYSFVLMSRGNS 1080

  Fly   850 VEQLSSSVPGSWQSPAGLPTIPSDELIK--QMRANVEETSNPTKTAIVRLPADIMTSASGDIKWM 912
            .        |..|....:.|.|.....|  ..:.:.||..   |.||. || ::..||.  ::|.
Zfish  1081 A--------GGLQQQVSIRTAPDLFTTKPAHQKLDPEEGG---KLAIT-LP-EVHNSAL--VRWF 1130

  Fly   913 ALMISQKNCAGVPHLKYDVSSDWPKVLSYQEAGADGTGDCSLEYQTTEERWHPEPVQRQRRDGE- 976
            .:::.....:.:.|.:.....|..:::......|                     |:|:||..: 
Zfish  1131 YIVVVPVTPSTLRHWENPEDIDLDELMGNNRDAA---------------------VRRRRRQTQD 1174

  Fly   977 -----VTSDEEIV---FTIGLDKCSEVQKTYCNGPLLPDTDYNVVV--------RLFTASGYSDA 1025
                 :.:..|.:   |.:|.:|   ....|.|.||.....|...:        ..||.|.:|:.
Zfish  1175 FLRPYIAAKLESLPERFVLGDEK---TYSNYYNKPLPGQQQYRTFILAALKDRDSTFTVSPFSEP 1236

  Fly  1026 AVLNFKTKAAIKV-----TLILVSVCSCLLLAFVLGLTVLWVRKRL--AWKRDSGQGIEDPFGNV 1083
            .::...:..:..|     ..::..|.:.:|:..::...:|:.|||.  :.|.:...|::|   ::
Zfish  1237 MMVKLHSGMSRHVEDPEMLWVMGPVLAVVLIIIIVIAILLFKRKRTSPSAKDEHSAGVKD---HL 1298

  Fly  1084 IAKNFAIFYTEVAKPEKL-----------------AREFKEITVVAL-----------ELSYSAS 1120
            :|.:     ::..:..:|                 .||...::|.||           .|.:|..
Zfish  1299 LAHS-----SDPVEMRRLNYQTQGSSAFNCPSTSRMREHPPVSVCALADHIERLRANDSLRFSQE 1358

  Fly  1121 -----------------ELGCHKNRYADIFPYDKNRVIL-DID-AEGSDYINASFIDGHTRKKEY 1166
                             |:...|||||::..||.:||:| .:| ..||||||.::|||:.::..|
Zfish  1359 YESVDPGQQFTWENSNLEVNKPKNRYANVIAYDHSRVVLTPVDGVPGSDYINGNYIDGYRKQNAY 1423

  Fly  1167 IATQGPKPESVMDFWRMILQYNVRVIVQVTQFREGNTIKCHEYYPYNVRGL----TVTIKSKEVL 1227
            ||||||.||::.|||||:.:.....||.:|:..|.:.:||.:|:|  .||.    .:.:...:.:
Zfish  1424 IATQGPLPETLSDFWRMVWEQRTSTIVMMTRLEEKSRVKCDQYWP--SRGTETYGMIQVSMLDTV 1486

  Fly  1228 ELYDRTELTVVHDKYGLKEK--VIHYYFKKWPDHGVPEDPMHLIMFVKKVKAEKRPSYSPIVVHC 1290
            ||...:..|....|.|..||  |..:.|..||||||||.|..::.|:::|||...|...|:||||
Zfish  1487 ELATYSVRTFALYKNGSSEKREVRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPPDAGPMVVHC 1551

  Fly  1291 SAGVGRTGTFIGLDLIMQRLKSESKINIFETVKKLRFQRMKMVQTQQQYTFLYACTYELV---KH 1352
            ||||||||.||.:|.:::|:|.|..::|:..|..:|.||..||||:.||.|::....|..   ..
Zfish  1552 SAGVGRTGCFIVIDAMLERMKHEKSVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEAATCGNT 1616

  Fly  1353 KIPRAAL-----KMDGRPKSVTVPAI 1373
            ::|..:|     |:...|...||.|:
Zfish  1617 EVPARSLYTHIQKLTQAPPGDTVTAM 1642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp52FNP_611093.2 FN3 648..749 CDD:238020 24/108 (22%)
PTPc 1100..1345 CDD:214550 107/297 (36%)
ptprfaXP_068077727.1 Ig strand F 210..217 CDD:409400
Ig strand G 220..231 CDD:409400
IgI_3_RPTP_IIa_LAR_like 241..322 CDD:409401
Ig strand A 241..243 CDD:409401
Ig strand A' 247..251 CDD:409401
Ig strand B 254..262 CDD:409401
Ig strand C 267..273 CDD:409401
Ig strand C' 275..277 CDD:409401
Ig strand D 280..284 CDD:409401
Ig strand E 289..294 CDD:409401
FN3 299..735 CDD:442628 76/427 (18%)
Ig strand F 301..308 CDD:409401
Ig strand G 312..321 CDD:409401
FN3 716..812 CDD:238020 20/104 (19%)
FN3 817..898 CDD:238020 16/98 (16%)
FN3 915..1003 CDD:238020 25/116 (22%)
FN3 1013..1082 CDD:238020 18/92 (20%)
PTP_DSP_cys 1340..1613 CDD:475123 103/274 (38%)
PTP_DSP_cys 1615..1905 CDD:475123 7/28 (25%)
I-set 33..124 CDD:400151
Ig strand B 50..54 CDD:409353
Ig strand C 63..67 CDD:409353
Ig strand E 86..93 CDD:409353
Ig strand F 104..109 CDD:409353
Ig strand G 117..120 CDD:409353
IgI_2_RPTP_IIa_LAR_like 136..232 CDD:409400
Ig strand A 136..138 CDD:409400
Ig strand A' 143..147 CDD:409400
Ig strand B 150..159 CDD:409400
Ig strand C 164..170 CDD:409400
Ig strand C' 172..174 CDD:409400
Ig strand D 183..187 CDD:409400
Ig strand E 196..201 CDD:409400
Blue background indicates that the domain is not in the aligned region.

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