DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ptp52F and ptprf

DIOPT Version :9

Sequence 1:NP_611093.2 Gene:Ptp52F / 36790 FlyBaseID:FBgn0034085 Length:1433 Species:Drosophila melanogaster
Sequence 2:XP_031756782.1 Gene:ptprf / 100493254 XenbaseID:XB-GENE-495325 Length:1920 Species:Xenopus tropicalis


Alignment Length:1578 Identity:355/1578 - (22%)
Similarity:587/1578 - (37%) Gaps:420/1578 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ILWIAGVQGQTVGSLVAVSESQELAEKVEVTVVSTVYTLGFSISNEADYSIDKVICRNGSGSETE 83
            :.|:||:              :||.::.|:.|...|..| .:|...|:|:               
 Frog   266 VKWMAGL--------------EELTKEDEMPVGRNVLEL-TNIKESANYT--------------- 300

  Fly    84 ANAAHVCENLNPCTFYTSVVSFRSNVSGKP-PPSDQTIYAYTEYKQPKTTVTSVVATANTIKVTW 147
                  |..::......:|...  .|...| ||.|.|:   ||     ||.|||.       :||
 Frog   301 ------CVAISSLGMIEAVAQI--TVKALPKPPLDGTV---TE-----TTATSVT-------LTW 342

  Fly   148 QTNDRACVESFGITAKATDYTKSFQLLNDKSSQTFV--NLSACLTHTITLDTRNNASVVVDTDAT 210
            .:.:...|..:.|..|......|||.::..::..:.  .||....:...:...||......::..
 Frog   343 DSGNPDPVSYYVIQYKPKASESSFQEVDGVATTRYSIGGLSPFSEYEFRIIAVNNIGRGPPSEVI 407

  Fly   211 DVDTQYAEPGD--LVMNVTNLASGITMITWGDPSEKN-CISNY-VF----------KWQRNDCGT 261
            :..|....|..  |.:....|::...::.|..|.|.| .|..: |:          .||:::  .
 Frog   408 EAQTGEQAPSSPPLKVQARMLSASTMLVQWDLPEEPNGQIRGFRVYYTTDPHLPFSMWQKHN--V 470

  Fly   262 DQNQDTTTDVPSTETTNEIDYVTTTPMETTPDTPSDEVKCEWTDVSSDGKLREYLLTDLQGCDLY 326
            ..|..||....:|.||..|..:..|.:...|  |||.:                           
 Frog   471 VDNHLTTIGGLTTGTTYSIRVLAFTSVGDGP--PSDII--------------------------- 506

  Fly   327 TFQVFINENSTAKASQTFTSAEKLVSAVYEPSPTAYPTQLHWTWFSPQNHPKCVANYSVTLTGPI 391
              ||...:...|:.......||.             .|::..||..|..  :.:..|.:......
 Frog   507 --QVKTQQGVPAQPVDFQAEAET-------------DTRILLTWLLPPQ--ERITKYELLYWEGT 554

  Fly   392 QRSENKTMNVITEETFAIFDDLDPCGIYLVEIVPNQLNGSAGTKYQEQSTVGEDQPSVIQDPVVE 456
            ...:.|.|...| .::|: :.|.|..:|...:......|........|:...:..||.   |..:
 Frog   555 DGEQQKLMFHPT-SSYAV-EGLKPDTLYHFRLAAWSDTGVGVYTPAIQARTAQSTPSA---PPQD 614

  Fly   457 AEAYSM-----EVSWKTPEYADL--CIDGY-----RLSGWMEDDKLVEVEALSITTQNTTVVFDK 509
            .|..|:     .|||..|..:..  .:..|     .|:|  ||.....|:::|....:..:   |
 Frog   615 VECSSLSSTAIRVSWVAPPASSRNGALTRYSLAYQALAG--EDTSRHVVDSISPDISSWEI---K 674

  Fly   510 NLLACQVYIIQIIPYTKENLDGQLRQVGVETKAAIVDYTKVKLEMKNAGSEFIDLIAFNADYNNS 574
            :|.....|.:.:..:|......:...:.|.|...:......|:|:.:..|..:     ...:.:.
 Frog   675 DLEKWTEYKVWVRAHTDVGAGPESSPIIVRTDEDVPSAPPRKVEVDSVNSTSV-----RVTWKSP 734

  Fly   575 CPTIFALFTCNATTQVRNPYAERYV--EGHSKQG---------------------FNASLSPLSP 616
            .||       ....|:|. |...||  ||...:|                     ::|.::.|||
 Frog   735 LPT-------KQNGQIRG-YQVTYVRLEGGEPRGNPIIKDVMLSEAQWRPEDVGDYDAVITGLSP 791

  Fly   617 YATYVCKVILYNVAGP---SEPVVDADMHTTTYFPEQPESVMLEKSTVSSLLFNWQPPTYTNGPI 678
            ..||...|..|...|.   |:|.|   :.||...|.:| ::|:..:.:::.|..|.||....|.:
 Frog   792 ETTYSITVAAYTTKGDGARSKPKV---VSTTGAVPGKP-TMMISTTALNTALIQWHPPREIVGEL 852

  Fly   679 KYYQAFLMRHEASYFVPADCAIVEQDTKSETKGDPSVNFTGLAPAVRYMMQVAAQNDFGMGVYTE 743
            ..|:....|.:...|:..|.          :|.:.....|||.....|:.:::|:|..|.|...|
 Frog   853 LGYRLQYKRVDEDRFITIDF----------SKNEHHHTVTGLHKGASYIFKLSAKNRAGAGEEYE 907

  Fly   744 PVIGIT--LPAVSDSVTQLTVLTQGPVNNNAVYEANVTITWKVPCKSNGDIEYFQLAFNGTRNNF 806
            ..|...  .|:......|:..||          .:...::|:.|..|..         ||...|:
 Frog   908 KEISTAEDFPSGFPQNLQVVGLT----------TSTTEVSWEPPVLSER---------NGKITNY 953

  Fly   807 APVSFERRVELDTGNKQGRMSYTETEMQPQFDYTVEVSVK-NRDVEQLSSSVPGSWQSPAGLPTI 870
            ..|..:...:.|..|.......|...::|...|.::|..: |:....||.|:...        |:
 Frog   954 TVVYRDINSQQDLTNVTRDTHITLVNLKPDTTYDIKVRARTNKGAGPLSPSIQSR--------TM 1010

  Fly   871 PSDELI-KQMRANVEETSNPTKTAIV---RLP-------------------------ADIMTSAS 906
            |.|::. |..|.|.     .|||:::   .||                         ..::::..
 Frog  1011 PVDQVFAKNFRVNA-----VTKTSVLLSWELPDSYKSAVPFKIFYNNQHVEVDGHSMRKLISNLK 1070

  Fly   907 GDIKWMALMISQKNCAGVPHLKYDVS-SDWPKVLSYQEAGAD---GTGDCSL---EYQTTEE-RW 963
            .|.::..:::::.:.||  .|::.|| ...|.||..:...|:   ..|..:|   :.|||.. ||
 Frog  1071 PDTEYSFVLMNRGSSAG--GLQHRVSIRTAPDVLKSKPFAANKYMEEGRFTLLLPQVQTTSPVRW 1133

  Fly   964 H--------------------PEPVQ-------------RQRRDGEVTSDEEIV----------F 985
            :                    ||.::             |.||  :.:.::..:          |
 Frog  1134 YYIVVVPLDSSSGGLNSRWQSPEEMELEQILEAINQGSRRHRR--QASKNKPYIAARVNTLPESF 1196

  Fly   986 TIGLDKCSEVQKTYCNGPLLPDTDYNVVV---------RLFTASGYSDAAVLNFKTKA------- 1034
            .:|.:|   ....:.|.||..:..|...|         :.:.||.|||..|:...::|       
 Frog  1197 ILGDNK---EYNGFINKPLNQNLRYTCFVLAALEDGDTKKYAASPYSDDIVVEVISQAKQQEEPE 1258

  Fly  1035 -------AIKVTLILVSVCSCLLLAFVLGLTVLWVRKRL---AWKRDSGQGIED----------- 1078
                   .:.|.||::.|.:.||      ......|||.   :.|.:...|::|           
 Frog  1259 MLWVMGPVLAVILIIIIVIAILL------FKSKQERKRTNSPSGKDEQSVGLKDCLLAHSSDPVE 1317

  Fly  1079 --------------PFGNV-------------IAKNFAIFYTEVAKPE---KLAREFKEITVVAL 1113
                          .:.|:             :|.|.     |..|..   |.::|::.|. ...
 Frog  1318 MRRLNYQTPGSSVPSYPNISSMRDHPPIPISDLADNI-----ERLKANDGLKFSQEYESID-PGQ 1376

  Fly  1114 ELSYSASELGCH--KNRYADIFPYDKNRVIL-DID-AEGSDYINASFIDGHTRKKEYIATQGPKP 1174
            :.::..|.|..:  |||||::..||.:|||| .:| ..|||||||::|||:.::..|||||||.|
 Frog  1377 QFTWENSNLEVNKPKNRYANVIAYDHSRVILTSVDGVPGSDYINANYIDGYRKQNAYIATQGPLP 1441

  Fly  1175 ESVMDFWRMILQYNVRVIVQVTQFREGNTIKCHEYYP------YNVRGLTVTIKSKEVLELYDRT 1233
            |::.|||||:.:.....||.:|:..|.:.:||.:|:|      |.:  :.||:  .:.:||...|
 Frog  1442 ETITDFWRMVWEQRTATIVMMTRLEEKSRVKCDQYWPGRGSETYGM--IQVTL--MDTVELATYT 1502

  Fly  1234 ELTVVHDKYGLKEK--VIHYYFKKWPDHGVPEDPMHLIMFVKKVKAEKRPSYSPIVVHCSAGVGR 1296
            ..|....|.|..||  |..:.|..||||||||.|..::.|:::||....|...|:||||||||||
 Frog  1503 VRTFTLYKNGSSEKRDVRQFQFMAWPDHGVPEYPTPILGFLRRVKGCNPPDAGPMVVHCSAGVGR 1567

  Fly  1297 TGTFIGLDLIMQRLKSESKINIFETVKKLRFQRMKMVQTQQQYTFLYACTYELVK---HKIPRAA 1358
            ||.||.:|.:::|:|.|..::|:..|..:|.||..||||:.||.|::....|.|.   .::|..:
 Frog  1568 TGCFIVIDAMLERVKLEKTVDIYGHVTCMRSQRNYMVQTEDQYIFIHEALLEAVMCGITEVPARS 1632

  Fly  1359 L-----KMDGRP--KSVT 1369
            |     |:...|  :|||
 Frog  1633 LYAHIQKLSQVPPGESVT 1650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp52FNP_611093.2 FN3 648..749 CDD:238020 23/100 (23%)
PTPc 1100..1345 CDD:214550 106/256 (41%)
PTPc 1125..1348 CDD:238006 101/234 (43%)
ptprfXP_031756782.1 I-set 30..121 CDD:400151
Ig strand A 30..33 CDD:409353
Ig strand A' 39..42 CDD:409353
Ig strand B 47..54 CDD:409353
Ig strand C 60..65 CDD:409353
Ig strand C' 68..70 CDD:409353
Ig strand D 77..81 CDD:409353
Ig strand E 83..90 CDD:409353
Ig strand F 100..108 CDD:409353
Ig strand G 111..121 CDD:409353
IgI_2_RPTP_IIa_LAR_like 133..229 CDD:409400
Ig strand B 149..153 CDD:409400
Ig strand C 162..166 CDD:409400
Ig strand E 193..197 CDD:409400
Ig strand F 207..212 CDD:409400
Ig strand G 219..222 CDD:409400
IgI_3_RPTP_IIa_LAR_like 238..319 CDD:409401 14/90 (16%)
Ig strand B 252..256 CDD:409401
Ig strand C 265..269 CDD:409401 0/2 (0%)
Ig strand E 286..290 CDD:409401 1/3 (33%)
Ig strand F 298..303 CDD:409401 2/25 (8%)
Ig strand G 311..314 CDD:409401 0/2 (0%)
FN3 322..411 CDD:238020 24/103 (23%)
FN3 418..510 CDD:238020 24/124 (19%)
FN3 515..603 CDD:238020 17/104 (16%)
fn3 611..698 CDD:394996 18/91 (20%)
FN3 713..818 CDD:238020 25/120 (21%)
FN3 823..904 CDD:238020 20/91 (22%)
fn3 921..1002 CDD:394996 17/99 (17%)
fn3 1018..1077 CDD:394996 9/63 (14%)
R-PTPc-F-1 1348..1623 CDD:350474 112/284 (39%)
R-PTP-F-2 1626..1915 CDD:350477 7/25 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19134
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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