DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and RLP12

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_177296.2 Gene:RLP12 / 843481 AraportID:AT1G71400 Length:847 Species:Arabidopsis thaliana


Alignment Length:828 Identity:184/828 - (22%)
Similarity:291/828 - (35%) Gaps:257/828 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   292 YVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRN-LLEVIPKFIG-LSGLKHLVLANNHIT---- 350
            |::.|.|.|..|.......:.||.:||.|:|..| .:..||..|| |:.|:||:||||.:|    
plant   111 YLRHLDLTNCNLYGEIPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIP 175

  Fly   351 -SISS-------------------ESLAALPLLRTLDLSRNKLHTIELNSFPKS----NNLVHLI 391
             |:.:                   :|:..|..||.|.|:.|.|    :...|.|    :|||||:
plant   176 SSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNL----IGEIPSSLGNLSNLVHLV 236

  Fly   392 LSFNEITNVNEHSFATLNNLTDLELSNNRLS-TLPIRVFKNLNQLKKLALN-------------- 441
            |:.|::......|...|..|..:...||.|| .:||. |.||.:|....|:              
plant   237 LTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPIS-FANLTKLSIFVLSSNNFTSTFPFDMSI 300

  Fly   442 FNQLE---INWSTFRG--------LESMKNLQLKSNKIRA-LQDGVFYVMHKIETIDLAMNQISS 494
            |:.||   :::::|.|        :.|::::.|:.|:... ::........|::.:.|..|::..
plant   301 FHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHG 365

  Fly   495 LSRQGLFNLTKLRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNL 559
            ...:.:..|..|..|::|.|..:.....|.....:|..||||.|.:....|.   ||.||.|:.|
plant   366 PIPESISRLLNLEELDISHNNFTGAIPPTISKLVNLLHLDLSKNNLEGEVPA---CLWRLNTMVL 427

  Fly   560 AHNRLQY---------------LQENTF-----------------------------DCVKN--- 577
            :||....               |..|:|                             .|::|   
plant   428 SHNSFSSFENTSQEEALIEELDLNSNSFQGPIPYMICKLSSLGFLDLSNNLFSGSIPSCIRNFSG 492

  Fly   578 -LEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNAL 641
             ::||||..|..|..:.|     .|....:|..||:..|.|:....|::.....||::|:.||.:
plant   493 SIKELNLGDNNFSGTLPD-----IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKI 552

  Fly   642 ASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKNRF--PQQAEHAVCGYPEHLLDRHLKS 704
            ..|..:..|.:..|:.|..:|                 |:|  |....||..|:      :.|:.
plant   553 KDIFPSWLESLPSLHVLNLRS-----------------NKFYGPLYHRHASIGF------QSLRI 594

  Fly   705 LSSSELVCVDSPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAAADELKIK-WRHDNQHVQE 768
            :..|......:..|.......||     ..:|.|             .|:...: ||:.:.:..|
plant   595 IDISHNNFSGTLPPYYFSNWKDM-----TTLTEE-------------MDQYMTEFWRYADSYYHE 641

  Fly   769 RPAVHDGASTE-TQIRHD----------LSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFGTTY 822
            ...|:.|.... .:||.|          ::.|.....|||:...|...|...:..|:        
plant   642 MEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVI-------- 698

  Fly   823 AQKFKISIGIHPTFLQVPSNLT-LDAGEMARLVCSASGDPTPEIALQKFGG----------SEFP 876
                       |.||   :||| |:..:::|  ...||....::|...|..          ...|
plant   699 -----------PRFL---ANLTKLETLDISR--NKLSGQIPQDLAALSFLSYMNFSHNLLQGPVP 747

  Fly   877 AATERRLQ----------------VIREENAFLITNAKPSDSGIYTCTALSAAGEIKVN---ATL 922
            ..|:.:.|                :.|:..|...|:..|.|        ||.|.|...|   |.:
plant   748 RGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPED--------LSEAEENMFNWVAAAI 804

  Fly   923 VVNDKPQPSIPLVHQEVVVGRTCVLQCLSETANADFELEHPHREWFKE 970
            ...       |.|...:|:|.              |...|.| |||.|
plant   805 AYG-------PGVLCGLVIGH--------------FYTSHNH-EWFTE 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 58/198 (29%)
leucine-rich repeat 293..316 CDD:275380 6/22 (27%)
LRR_8 316..373 CDD:290566 26/82 (32%)
leucine-rich repeat 317..338 CDD:275380 10/22 (45%)
leucine-rich repeat 339..362 CDD:275380 11/46 (24%)
leucine-rich repeat 363..386 CDD:275380 8/26 (31%)
LRR_8 386..445 CDD:290566 22/73 (30%)
leucine-rich repeat 387..410 CDD:275380 8/22 (36%)
leucine-rich repeat 411..434 CDD:275380 10/23 (43%)
leucine-rich repeat 435..457 CDD:275380 7/46 (15%)
LRR_8 457..516 CDD:290566 11/59 (19%)
leucine-rich repeat 458..481 CDD:275380 2/23 (9%)
leucine-rich repeat 482..505 CDD:275380 3/22 (14%)
LRR_RI <498..669 CDD:238064 50/218 (23%)
LRR_8 504..564 CDD:290566 20/59 (34%)
leucine-rich repeat 506..529 CDD:275380 5/22 (23%)
leucine-rich repeat 530..553 CDD:275380 9/22 (41%)
leucine-rich repeat 554..577 CDD:275380 9/66 (14%)
LRR_8 576..641 CDD:290566 20/68 (29%)
leucine-rich repeat 578..604 CDD:275380 8/25 (32%)
leucine-rich repeat 607..630 CDD:275380 6/22 (27%)
leucine-rich repeat 631..652 CDD:275380 7/20 (35%)
LRRCT 665..712 CDD:214507 8/48 (17%)
IG 734..823 CDD:214652 18/100 (18%)
Ig 735..823 CDD:143165 18/99 (18%)
I-set 834..924 CDD:254352 26/119 (22%)
Ig 851..924 CDD:299845 19/101 (19%)
IG 936..1027 CDD:214652 9/35 (26%)
Ig 961..1020 CDD:143165 6/10 (60%)
RLP12NP_177296.2 LRRNT_2 36..80 CDD:285463
LRR_8 112..170 CDD:290566 23/57 (40%)
leucine-rich repeat 112..135 CDD:275380 6/22 (27%)
leucine-rich repeat 136..159 CDD:275380 10/22 (45%)
LRR_8 159..218 CDD:290566 16/58 (28%)
leucine-rich repeat 160..183 CDD:275380 9/22 (41%)
leucine-rich repeat 184..207 CDD:275380 2/22 (9%)
LRR_RI 198..479 CDD:238064 66/288 (23%)
LRR_8 206..266 CDD:290566 20/63 (32%)
leucine-rich repeat 208..231 CDD:275380 8/26 (31%)
leucine-rich repeat 232..255 CDD:275380 8/22 (36%)
leucine-rich repeat 256..279 CDD:275380 10/23 (43%)
leucine-rich repeat 280..352 CDD:275380 10/71 (14%)
leucine-rich repeat 304..322 CDD:275380 4/17 (24%)
LRR_8 351..411 CDD:290566 15/59 (25%)
leucine-rich repeat 353..376 CDD:275380 3/22 (14%)
LRR_RI 374..601 CDD:238064 58/257 (23%)
leucine-rich repeat 377..400 CDD:275380 5/22 (23%)
leucine-rich repeat 401..422 CDD:275380 9/23 (39%)
leucine-rich repeat 445..468 CDD:275380 3/22 (14%)
leucine-rich repeat 469..493 CDD:275380 2/23 (9%)
leucine-rich repeat 494..517 CDD:275380 8/27 (30%)
LRR_8 516..576 CDD:290566 17/76 (22%)
leucine-rich repeat 518..541 CDD:275380 6/22 (27%)
leucine-rich repeat 542..565 CDD:275380 7/22 (32%)
leucine-rich repeat 592..616 CDD:275380 3/23 (13%)
leucine-rich repeat 617..683 CDD:275380 16/83 (19%)
LRR_8 682..742 CDD:290566 15/83 (18%)
LRR_4 682..719 CDD:289563 11/60 (18%)
leucine-rich repeat 684..707 CDD:275380 8/44 (18%)
leucine-rich repeat 708..729 CDD:275380 5/22 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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