DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and GHR1

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001320016.1 Gene:GHR1 / 827842 AraportID:AT4G20940 Length:1037 Species:Arabidopsis thaliana


Alignment Length:807 Identity:176/807 - (21%)
Similarity:289/807 - (35%) Gaps:231/807 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 EEDMAALHYPLSASHPPAG-VQGSSSSSGISIQSGSLETNGFVADDGGQYEHAQKALEAAAAAAK 256
            ::.||.|.:.....|.|.| |..|.:...|.........||.|.:.|.            .|...
plant     7 QDIMALLEFKKGIKHDPTGFVLNSWNDESIDFNGCPSSWNGIVCNGGN------------VAGVV 59

  Fly   257 ASNKYNIDCPKDCKCLNVLFDCDKLHLERVPVLPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVS 321
            ..|            |.:..|.|......:..|..    |.::||.|:.....::.:..:|..:.
plant    60 LDN------------LGLTADADFSLFSNLTKLVK----LSMSNNSLSGVLPNDLGSFKSLQFLD 108

  Fly   322 LKRNLL-EVIPKFIGLS-GLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKS 384
            |..||. ..:||.||.| .|::|.|:.|:.:....||:..|..|::||:|.|.|......|..:.
plant   109 LSDNLFSSSLPKEIGRSVSLRNLSLSGNNFSGEIPESMGGLISLQSLDMSSNSLSGPLPKSLTRL 173

  Fly   385 NNLVHLILSFN----------------EITNVNEHS--------FATLNNLTDLELSNNRLSTLP 425
            |:|::|.||.|                |:.:::.:|        |..|.|.:.:::|.|||.|..
plant   174 NDLLYLNLSSNGFTGKMPRGFELISSLEVLDLHGNSIDGNLDGEFFLLTNASYVDISGNRLVTTS 238

  Fly   426 IRVFKNLNQ-LKKLALNFNQLEIN-WSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLA 488
            .::...::: :|.|.|:.||||.: .|.|:..:::|.|.|..|.:.....|..|| :.:|.:.|:
plant   239 GKLLPGVSESIKHLNLSHNQLEGSLTSGFQLFQNLKVLDLSYNMLSGELPGFNYV-YDLEVLKLS 302

  Fly   489 MNQISSLSRQGLF---------------NL---------TKLRHLNLSFNAI------------- 516
            .|:.|......|.               ||         |.|..|:||.|::             
plant   303 NNRFSGSLPNNLLKGDSLLLTTLDLSGNNLSGPVSSIMSTTLHTLDLSSNSLTGELPLLTGGCVL 367

  Fly   517 -----SRIE--VDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRL---------- 564
                 ::.|  :..|...:::|.||||.|......|.....|.|...|||::|:|          
plant   368 LDLSNNQFEGNLTRWSKWENIEYLDLSQNHFTGSFPDATPQLLRANHLNLSYNKLTGSLPERIPT 432

  Fly   565 QYLQENTFDCVKN---------------LEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHG 614
            .|.:....|...|               |||::|:.|.::..|    ...|..|.| :|.|||..
plant   433 HYPKLRVLDISSNSLEGPIPGALLSMPTLEEIHLQNNGMTGNI----GPLPSSGSR-IRLLDLSH 492

  Fly   615 NNLKQISTKAMSGLNNLEILNLGSNALASIQVNAFEHMLRLNKLVFKSLNFI------CDCDLVW 673
            |............|.||::|||.:|.|:....::...::.|:.|.....:|.      ...:::.
plant   493 NRFDGDLPGVFGSLTNLQVLNLAANNLSGSLPSSMNDIVSLSSLDVSQNHFTGPLPSNLSSNIMA 557

  Fly   674 FQ-----------QWLKNRFPQQAEH-------AVCGYPEHLLDRHLKSLSSSELVCVDSPKPRV 720
            |.           :.||| ||..:.:       ...|.|........|:.|:::||.|       
plant   558 FNVSYNDLSGTVPENLKN-FPPPSFYPGNSKLVLPAGSPGSSASEASKNKSTNKLVKV------- 614

  Fly   721 EQEPDDMLAVNAA---------NITLECIASSPTAASLAAADELKIKWRHDNQHVQERPAVHDGA 776
                  ::.|:.|         .|.|.||..|      ...:|..|..:..|:..|..|:...|.
plant   615 ------VIIVSCAVALIILILVAILLFCICKS------RRREERSITGKETNRRAQTIPSGSGGG 667

  Fly   777 STETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFGTTYA-----QKFKISIGIHPTF 836
            ..                       |:.|.      :|::..|::..     :|..::.|..|: 
plant   668 MV-----------------------VSAED------LVASRKGSSSEILSPDEKLAVATGFSPS- 702

  Fly   837 LQVPSNLTLDAGEMARLVCSASGDPTP 863
              ..|||:...|         |||..|
plant   703 --KTSNLSWSPG---------SGDSFP 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 51/197 (26%)
leucine-rich repeat 293..316 CDD:275380 4/22 (18%)
LRR_8 316..373 CDD:290566 21/58 (36%)
leucine-rich repeat 317..338 CDD:275380 9/22 (41%)
leucine-rich repeat 339..362 CDD:275380 7/22 (32%)
leucine-rich repeat 363..386 CDD:275380 7/22 (32%)
LRR_8 386..445 CDD:290566 19/83 (23%)
leucine-rich repeat 387..410 CDD:275380 9/46 (20%)
leucine-rich repeat 411..434 CDD:275380 5/22 (23%)
leucine-rich repeat 435..457 CDD:275380 9/22 (41%)
LRR_8 457..516 CDD:290566 20/82 (24%)
leucine-rich repeat 458..481 CDD:275380 7/22 (32%)
leucine-rich repeat 482..505 CDD:275380 7/46 (15%)
LRR_RI <498..669 CDD:238064 53/245 (22%)
LRR_8 504..564 CDD:290566 21/79 (27%)
leucine-rich repeat 506..529 CDD:275380 7/42 (17%)
leucine-rich repeat 530..553 CDD:275380 8/22 (36%)
leucine-rich repeat 554..577 CDD:275380 7/32 (22%)
LRR_8 576..641 CDD:290566 22/79 (28%)
leucine-rich repeat 578..604 CDD:275380 7/25 (28%)
leucine-rich repeat 607..630 CDD:275380 6/22 (27%)
leucine-rich repeat 631..652 CDD:275380 6/20 (30%)
LRRCT 665..712 CDD:214507 12/70 (17%)
IG 734..823 CDD:214652 15/88 (17%)
Ig 735..823 CDD:143165 15/87 (17%)
I-set 834..924 CDD:254352 9/30 (30%)
Ig 851..924 CDD:299845 4/13 (31%)
IG 936..1027 CDD:214652
Ig 961..1020 CDD:143165
GHR1NP_001320016.1 PLN00113 2..1036 CDD:215061 176/807 (22%)
leucine-rich repeat 80..103 CDD:275380 5/26 (19%)
leucine-rich repeat 104..127 CDD:275380 9/22 (41%)
leucine-rich repeat 128..151 CDD:275380 7/22 (32%)
leucine-rich repeat 152..175 CDD:275380 7/22 (32%)
leucine-rich repeat 176..199 CDD:275380 5/22 (23%)
leucine-rich repeat 200..223 CDD:275380 4/22 (18%)
leucine-rich repeat 224..248 CDD:275380 5/23 (22%)
leucine-rich repeat 249..272 CDD:275380 9/22 (41%)
leucine-rich repeat 296..314 CDD:275380 4/17 (24%)
leucine-rich repeat 344..387 CDD:275380 7/42 (17%)
leucine-rich repeat 388..412 CDD:275380 8/23 (35%)
leucine-rich repeat 413..436 CDD:275380 6/22 (27%)
leucine-rich repeat 437..460 CDD:275380 2/22 (9%)
leucine-rich repeat 461..484 CDD:275380 8/26 (31%)
leucine-rich repeat 485..508 CDD:275380 6/22 (27%)
leucine-rich repeat 509..532 CDD:275380 6/22 (27%)
leucine-rich repeat 533..553 CDD:275380 3/19 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.