DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and lingo3a

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001076323.1 Gene:lingo3a / 567293 ZFINID:ZDB-GENE-060503-54 Length:605 Species:Danio rerio


Alignment Length:715 Identity:155/715 - (21%)
Similarity:240/715 - (33%) Gaps:245/715 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   257 ASNKYNIDCPKDCKCL----NVLFDCDKLHLERVP-VLPSYVQTLHLANNKLNDTTVLEIRNLLN 316
            ||..:...||:.|.|:    .|:  |....|..:| .:|:             ||.:|:      
Zfish    19 ASITHGQSCPQRCDCIPHQRAVM--CQNKRLGSIPGGIPA-------------DTRLLD------ 62

  Fly   317 LTKVSLKRNLLEVIPKFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSF 381
                                       |:.|.:..:....|:.|..|..||||.|.:..:|.|:|
Zfish    63 ---------------------------LSCNSLRWVEYNDLSTLLRLEELDLSENLISVLEPNAF 100

  Fly   382 PKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQL- 445
            ....||..|.|..|::..|...:|:.|.|||.|:||.|:|..|....|::|..|:.|.:..|.| 
Zfish   101 SSLLNLRVLRLRANQLKLVPMGAFSRLTNLTTLDLSGNKLVILLDFTFQDLRNLRNLEVGDNDLV 165

  Fly   446 EINWSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTKLRHLN 510
            .|:...|.||..::.|.::...:.::.......:..:.|:.|....|:||..|....|..||.| 
Zfish   166 YISNKAFLGLVGLRELTIERCNLTSISGQSLSYLRGLVTLRLRYLSIASLEEQNFRKLGGLRGL- 229

  Fly   511 LSFNAISRIEVDTWEFTQ----------SLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQ 565
                     |:|.|.|.:          :|..|.::|..|:......|..|..|.:|||::|.:.
Zfish   230 ---------EIDHWPFLEYISPHSFQGLNLSWLSITNTNISTVPTGALRNLIHLASLNLSYNPIS 285

  Fly   566 YLQENTFDCVKNLEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNN 630
            .|:                    ||.:.|         |.:|:.|.|.|.||..:....:.||..
Zfish   286 VLE--------------------SWALRD---------LVRLKELHLVGTNLISVQPYGLGGLQQ 321

  Fly   631 LEILNLGSNALASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKN-RFPQQAEHAVCGYP 694
            :.:|||.:|.|.:::..:|..:..|..|........|||.|:|..|..|. .|  ..:..||..|
Zfish   322 IRLLNLSNNGLVTLEEGSFHSVNTLETLRVDGNPLSCDCRLLWILQRRKTLNF--DGKSPVCTAP 384

  Fly   695 EHLLDRHLKSLSSSEL----VCVDSPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAAADEL 755
            ..:..:.|.:.:.|.|    .|         |.|                               
Zfish   385 VEVRGKSLSTFTDSALFDHFTC---------QRP------------------------------- 409

  Fly   756 KIKWRHDNQHVQERPAVHDGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFGT 820
            ||:    |:.:|:                                                    
Zfish   410 KIR----NRKLQQ---------------------------------------------------- 418

  Fly   821 TYAQKFKISIGIHPTFLQVPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSEFPAATERR--- 882
                                  ||...|::...||.|.|||||.|         |..:.:||   
Zfish   419 ----------------------LTAREGQVVSFVCRAEGDPTPVI---------FWISPQRRRIT 452

  Fly   883 -----LQVIREENAFLITNAKPSDSGIYTCTALSAAGEIKVNATLVVNDKPQPSIPLVHQEVVVG 942
                 ..::..|....|..|:.:|:|.|.|.|.:|.|.....|||.|:..|..|....::...||
Zfish   453 TKSTGRVIVLPEGTLEIRYAQVTDTGTYICIASNAGGNDTYFATLTVSGLPLDSALSANRTYYVG 517

  Fly   943  942
            Zfish   518  517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 86/359 (24%)
leucine-rich repeat 293..316 CDD:275380 3/22 (14%)
leucine-rich repeat 317..338 CDD:275380 0/20 (0%)
leucine-rich repeat 339..362 CDD:275380 4/22 (18%)
leucine-rich repeat 363..386 CDD:275380 9/22 (41%)
leucine-rich repeat 387..410 CDD:275380 7/22 (32%)
leucine-rich repeat 411..434 CDD:275380 10/22 (45%)
leucine-rich repeat 435..457 CDD:275380 8/22 (36%)
leucine-rich repeat 458..481 CDD:275380 1/22 (5%)
leucine-rich repeat 482..505 CDD:275380 7/22 (32%)
leucine-rich repeat 506..529 CDD:275380 7/32 (22%)
leucine-rich repeat 530..553 CDD:275380 6/22 (27%)
leucine-rich repeat 554..577 CDD:275380 6/22 (27%)
leucine-rich repeat 578..604 CDD:275380 3/25 (12%)
leucine-rich repeat 607..630 CDD:275380 8/22 (36%)
leucine-rich repeat 631..652 CDD:275380 6/20 (30%)
LRRCT 665..712 CDD:214507 14/51 (27%)
Ig_3 717..816 CDD:464046 6/98 (6%)
Ig 835..924 CDD:472250 28/96 (29%)
Ig strand B 851..855 CDD:409353 0/3 (0%)
Ig strand C 864..868 CDD:409353 1/3 (33%)
Ig strand E 890..894 CDD:409353 0/3 (0%)
Ig strand F 904..909 CDD:409353 2/4 (50%)
Ig strand G 917..920 CDD:409353 0/2 (0%)
Ig_3 927..1013 CDD:464046 4/16 (25%)
lingo3aNP_001076323.1 LRRNT 27..55 CDD:396168 8/29 (28%)
LRR 44..>356 CDD:443914 93/396 (23%)
leucine-rich repeat 58..81 CDD:275380 6/55 (11%)
leucine-rich repeat 82..105 CDD:275380 9/22 (41%)
leucine-rich repeat 130..153 CDD:275380 10/22 (45%)
leucine-rich repeat 154..177 CDD:275380 8/22 (36%)
leucine-rich repeat 178..201 CDD:275380 1/22 (5%)
leucine-rich repeat 202..225 CDD:275380 7/22 (32%)
leucine-rich repeat 226..249 CDD:275380 7/32 (22%)
leucine-rich repeat 250..273 CDD:275380 6/22 (27%)
leucine-rich repeat 274..297 CDD:275380 10/51 (20%)
leucine-rich repeat 298..321 CDD:275380 8/22 (36%)
leucine-rich repeat 322..342 CDD:275380 6/19 (32%)
PCC 326..>392 CDD:188093 18/67 (27%)
Ig 408..499 CDD:472250 33/208 (16%)
Ig strand B 427..431 CDD:409353 0/3 (0%)
Ig strand C 440..444 CDD:409353 2/12 (17%)
Ig strand E 465..469 CDD:409353 0/3 (0%)
Ig strand F 479..484 CDD:409353 2/4 (50%)
Ig strand G 492..495 CDD:409353 0/2 (0%)

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