DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and lingo2b

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:XP_073775806.1 Gene:lingo2b / 564052 ZFINID:ZDB-GENE-080723-57 Length:629 Species:Danio rerio


Alignment Length:667 Identity:159/667 - (23%)
Similarity:251/667 - (37%) Gaps:181/667 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 CPKDCKCLNVLFDCDKLHLERVPVLPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRNLLEV 329
            ||..|:|             .||.                             ..||..|..|..
Zfish    49 CPARCEC-------------SVPT-----------------------------RSVSCHRRRLAQ 71

  Fly   330 IPKFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKSNNLVHLILSF 394
            :|:.|.:. .:.|.|:.|.:..::.::.::|.||..||||.|.|.::|.|||.....|..|.|..
Zfish    72 VPEGIPIE-TRSLDLSKNRLRIVTPQNFSSLLLLEELDLSNNLLSSVEPNSFRAQPRLRSLRLRS 135

  Fly   395 NEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQLE-INWSTFRGLESM 458
            |::|.:...:.|.|:.||.|::|.|||..|....|:...:|:.|.|:.|:|. |....|.||.|:
Zfish   136 NQLTLLPRGALAGLSELTLLDVSQNRLVILLDYGFEEQRRLRVLELSDNELVFIAPRAFSGLASL 200

  Fly   459 KNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTKLRHLNLSFNAISRIEVDT 523
            ::|.|:...:..:.......:|.:.::.|....|:.|.......|.:|:||          |||.
Zfish   201 RSLTLQRCNLSTVPTHALAHLHGLTSLRLRDLGIAELQAHTFKGLPRLKHL----------EVDR 255

  Fly   524 WEF-----TQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKN---LEE 580
            |..     |.:|:.|:||                   ||::.|..|     .:...|.|   |..
Zfish   256 WPLLEGFPTSALQGLNLS-------------------TLSITHTNL-----TSVPVVTNLLYLTH 296

  Fly   581 LNLRRNRL-----SWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNA 640
            |||..:|:     .|:          :|:.:|..|.:...||..:..:|..|.::|.||:|..|.
Zfish   297 LNLSYSRIRVLPAGWL----------RGMDRLEVLRVRQANLLSVEPQAFQGASSLRILDLCYNR 351

  Fly   641 LASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKNRFPQ------QAEHAVCGYPEHLLD 699
            ||:::.:.|.....|..|:......:|||.|    :||..|.|.      |.|   |..|..|..
Zfish   352 LATLERSVFPVTEALQTLLIGQNPLVCDCRL----RWLLERTPPLLYGDVQPE---CSAPAPLAG 409

  Fly   700 RHLKSLSSSEL----VCVDSPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAAADELKIKWR 760
            :.|:.|..:::    :|.   ||||..                 :||.|     |.|:|.:..|.
Zfish   410 KPLRDLVEAQISRYVICT---KPRVIS-----------------MASYP-----AQAEEGQRAWL 449

  Fly   761 HDNQHVQERPAVHDGASTETQIRHDLSTNQTS-----IYGYLRLTNVTYESAGRYQCVVSNAFG- 819
            :.:......|:|    |..|.:|..::|..|.     ..|.|.......:.:|.|.||.||..| 
Zfish   450 YCSADGAPPPSV----SWLTPLRRHITTKSTGRVVVHTNGSLEFRMAEPQDSGMYVCVASNPAGN 510

  Fly   820 ----TTYAQKFKISIGIHPTFLQVPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSEFPAATE 880
                .|.|.|   :.||....|....:...|                |:.......|:|     |
Zfish   511 ATLSVTLAVK---TSGIRDRALYANRSFLFD----------------PDYNSSLINGTE-----E 551

  Fly   881 RRLQVIREENAFLITNA 897
            ..::|:.:....|::.|
Zfish   552 YTIRVVLDFTTILVSTA 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 91/362 (25%)
leucine-rich repeat 293..316 CDD:275380 0/22 (0%)
leucine-rich repeat 317..338 CDD:275380 6/20 (30%)
leucine-rich repeat 339..362 CDD:275380 4/22 (18%)
leucine-rich repeat 363..386 CDD:275380 11/22 (50%)
leucine-rich repeat 387..410 CDD:275380 7/22 (32%)
leucine-rich repeat 411..434 CDD:275380 9/22 (41%)
leucine-rich repeat 435..457 CDD:275380 9/22 (41%)
leucine-rich repeat 458..481 CDD:275380 2/22 (9%)
leucine-rich repeat 482..505 CDD:275380 4/22 (18%)
leucine-rich repeat 506..529 CDD:275380 8/27 (30%)
leucine-rich repeat 530..553 CDD:275380 4/22 (18%)
leucine-rich repeat 554..577 CDD:275380 5/22 (23%)
leucine-rich repeat 578..604 CDD:275380 6/30 (20%)
leucine-rich repeat 607..630 CDD:275380 6/22 (27%)
leucine-rich repeat 631..652 CDD:275380 8/20 (40%)
LRRCT 665..712 CDD:214507 15/56 (27%)
Ig_3 717..816 CDD:464046 24/103 (23%)
Ig 835..924 CDD:472250 9/63 (14%)
Ig strand B 851..855 CDD:409353 0/3 (0%)
Ig strand C 864..868 CDD:409353 0/3 (0%)
Ig strand E 890..894 CDD:409353 0/3 (0%)
Ig strand F 904..909 CDD:409353
Ig strand G 917..920 CDD:409353
Ig_3 927..1013 CDD:464046
lingo2bXP_073775806.1 None
Blue background indicates that the domain is not in the aligned region.

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