DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and trn

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster


Alignment Length:793 Identity:188/793 - (23%)
Similarity:293/793 - (36%) Gaps:233/793 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 AQKALEAAAAAAKASNKYNIDCPKDCKCLNVLFDCDKLHLERVPVLPSYVQTLHLANNKLNDTTV 308
            |...:|.||..|        :||..|:|                                :|.|:
  Fly    17 ASIGVEPAAGLA--------NCPPGCQC--------------------------------DDNTL 41

  Fly   309 LEIRNLLNLTKVSLKRNLLEVIPKFIGLS-GLKHLVLANNHITSISSESLAALPLLRTLDLSRNK 372
            :          |......|:|:|  |.|: .::.||:.:|.|.:|.| |:.....|..||||.|.
  Fly    42 V----------VQCGEGQLDVLP--IALNPSIQRLVIKSNKIKTIDS-SIQFYAELTFLDLSSNH 93

  Fly   373 LHTIELNSFPKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFKNLNQLKK 437
            |.||...:|.....|..:.|:.|:|..::..:|..|:.:|.|.|..|::|.|....|..|.::::
  Fly    94 LMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKIEE 158

  Fly   438 LALNFNQL-EINWSTFRGLESMKNLQLKSNKIRALQDGV-FYVMHKIETIDLAMNQISSLSRQGL 500
            |.|..|:: .::...|.||..::.|.|..|.:..:.|.| |..|..:..:.|.||.:.|:.....
  Fly   159 LNLGENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAF 223

  Fly   501 FNLTKLRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQ 565
            .:|..|..|.|...::..|..|::...|.|.:||||:|.::......|..|.||:.|:|..|..:
  Fly   224 QDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFE 288

  Fly   566 YLQENTFDCVKNLEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGN-NLKQISTKAMSGLN 629
            .:.|..                             |.||::|:||:::|. .||::.|.|.|...
  Fly   289 VISEGA-----------------------------FMGLKQLKRLEVNGALRLKRVMTGAFSDNG 324

  Fly   630 NLEILNLGSN-ALASIQVNAFEHMLRLNKLVFKSLNFI------------------------CDC 669
            |||.|||.|| .|..:|..|...:.:|..:|.|: |.:                        |||
  Fly   325 NLEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKA-NALTSLAEGLFPWKDLQTLDLSENPLSCDC 388

  Fly   670 DLVWFQQWL--KNRFPQQAEHAVCGYPEHLLDRHLKSLSSSELVCVDSPKPRVEQEPDDMLAVNA 732
            .::|....|  ||.........:|.:||.|....|:.|:.:.:.|..: .||.:.....:|..:|
  Fly   389 RVMWLHNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHA-DPRKQALIGALLVGSA 452

  Fly   733 ANITLECIASSPTAASLAAADELKIKWRHDNQHVQERPAVHDGASTETQIRHDLSTNQTSIYGYL 797
            |.||           :||.   :..:.||                   :||   .|.:..::|..
  Fly   453 ATIT-----------ALAL---VLYRCRH-------------------KIR---ETIKGGLWGNS 481

  Fly   798 RLTNVTYESAGRYQCVVSNAFGTTYAQKFKISIGIHPTFLQVPSNLTL----------------- 845
            .|.....|    ||....:....:..|....|:|||.||   |:..|.                 
  Fly   482 ALGRKERE----YQKTFCDEDYMSRHQHHPCSLGIHSTF---PNTYTAPHHPGATHHYGMCPMPV 539

  Fly   846 -DAGEMARLVCSASGDPTPEIALQKFGGSEFPAATERRLQVIREENAFLITNAKPSDSGIYTCTA 909
             |.|.:         ||.     |||.....|.||     :|.|:.   :.|.|          |
  Fly   540 NDLGAI---------DPQ-----QKFQQLVVPTAT-----MISEKK---LNNNK----------A 572

  Fly   910 LSAAGEIKVNATLVVNDKPQPSIPLVHQEVVVGRTCVLQCLSETANADFELEHPHREWFKENKPI 974
            |.:.|.|..:|:.|::.|                       |.|...|...::|....:  .||.
  Fly   573 LVSQGAIDDSASFVLHMK-----------------------SATMGRDVHQQNPQLNHY--TKPQ 612

  Fly   975 HISPTAPDGDRYY 987
            .:|.||..||..|
  Fly   613 FLSATATVGDSCY 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 42/172 (24%)
leucine-rich repeat 293..316 CDD:275380 2/22 (9%)
LRR_8 316..373 CDD:290566 19/57 (33%)
leucine-rich repeat 317..338 CDD:275380 6/21 (29%)
leucine-rich repeat 339..362 CDD:275380 7/22 (32%)
leucine-rich repeat 363..386 CDD:275380 10/22 (45%)
LRR_8 386..445 CDD:290566 17/58 (29%)
leucine-rich repeat 387..410 CDD:275380 6/22 (27%)
leucine-rich repeat 411..434 CDD:275380 8/22 (36%)
leucine-rich repeat 435..457 CDD:275380 6/22 (27%)
LRR_8 457..516 CDD:290566 15/59 (25%)
leucine-rich repeat 458..481 CDD:275380 7/23 (30%)
leucine-rich repeat 482..505 CDD:275380 5/22 (23%)
LRR_RI <498..669 CDD:238064 49/196 (25%)
LRR_8 504..564 CDD:290566 19/59 (32%)
leucine-rich repeat 506..529 CDD:275380 5/22 (23%)
leucine-rich repeat 530..553 CDD:275380 8/22 (36%)
leucine-rich repeat 554..577 CDD:275380 5/22 (23%)
LRR_8 576..641 CDD:290566 20/66 (30%)
leucine-rich repeat 578..604 CDD:275380 1/25 (4%)
leucine-rich repeat 607..630 CDD:275380 9/23 (39%)
leucine-rich repeat 631..652 CDD:275380 10/21 (48%)
LRRCT 665..712 CDD:214507 13/72 (18%)
IG 734..823 CDD:214652 14/88 (16%)
Ig 735..823 CDD:143165 14/87 (16%)
I-set 834..924 CDD:254352 23/107 (21%)
Ig 851..924 CDD:299845 17/72 (24%)
IG 936..1027 CDD:214652 12/52 (23%)
Ig 961..1020 CDD:143165 9/27 (33%)
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 7/18 (39%)
LRR_8 83..142 CDD:290566 20/58 (34%)
leucine-rich repeat 84..107 CDD:275380 10/22 (45%)
leucine-rich repeat 108..131 CDD:275380 6/22 (27%)
LRR_RI 129..421 CDD:238064 85/321 (26%)
LRR_8 132..190 CDD:290566 17/57 (30%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..204 CDD:275380 7/23 (30%)
LRR_8 203..263 CDD:290566 17/59 (29%)
leucine-rich repeat 205..228 CDD:275380 5/22 (23%)
leucine-rich repeat 229..252 CDD:275380 5/22 (23%)
LRR_8 252..308 CDD:290566 20/84 (24%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 8/51 (16%)
leucine-rich repeat 301..322 CDD:275380 8/20 (40%)
LRR_8 325..384 CDD:290566 15/59 (25%)
leucine-rich repeat 326..350 CDD:275380 10/23 (43%)
leucine-rich repeat 351..373 CDD:275380 4/22 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.