DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and Con

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster


Alignment Length:682 Identity:155/682 - (22%)
Similarity:242/682 - (35%) Gaps:241/682 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 LITYMLLITAATICQSAAQSPSSSNGNGVGGSGSTGGSPLSALLKSGGASYNQQLPQQQLFAMLT 154
            |:..:|||.|..:..:..::.......|.|.|        |.:|.|..:|.|..           
  Fly    21 LLLSLLLIGACLVTPTEGRAKDDRRTRGRGSS--------SGVLSSSSSSSNNM----------- 66

  Fly   155 RNGGGSSGPRSSGGNRGY--TSARQHFMALSEDYSDADVDEEDMAALHYPLSASHPPAGVQGSSS 217
            .||..|....::|.:.||  ||:                                       |:.
  Fly    67 NNGYYSGSSSTAGSSSGYVFTSS---------------------------------------SAV 92

  Fly   218 SSGISIQSGSLETNGFVADDGGQYEHAQKALEAAAAAAKASNKYNIDCPKDCKCLNVLFDCDKLH 282
            :||.:..||.:::.||..                         ...|....|.|..     |:.|
  Fly    93 NSGSTGYSGPMDSTGFCT-------------------------RRRDMKLMCYCTP-----DENH 127

  Fly   283 LERVPVLPS----YVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRNLLEVIPKFIGLSGLKHLV 343
               |||..:    :.:.||     .||||         .|:...::.|.|:  ||         |
  Fly   128 ---VPVQKAECWVFSEGLH-----QNDTT---------WTRFYQQKRLREL--KF---------V 164

  Fly   344 LANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKSNNLVHLILSFNEITNVNEHSFATL 408
            :.||          |.|..:.|:.:...|             ||..:::.::::..|..::||.|
  Fly   165 IQNN----------ARLDYIPTMIIEPLK-------------NLSSIVIEYSQVEIVKSYAFANL 206

  Fly   409 NNLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQL-EINWSTFRGLESMKNLQLKSNKIRALQ 472
            ..|..:.|:||.:..|....|.|..:|::|.|..||: |::...||.|...:.|.|.:|.|..|.
  Fly   207 PFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLH 271

  Fly   473 DGVFYVMHKIETIDLAMNQISSLSRQ-----GLFNLTKLRHLNLSFNAISRIEVDTWEFTQSLEV 532
            :|:|..|.::..::||.|||:.|:.:     |..|:.||...||:|.. ..:..:.|    ||..
  Fly   272 EGLFADMARLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIG-DTVFAELW----SLSE 331

  Fly   533 LDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEELNLRRNRLSWIIEDQSA 597
            |:|.:|.|.....:.||.|:.||||||                         ||.|         
  Fly   332 LELDDNRIERISERALDGLNTLKTLNL-------------------------RNNL--------- 362

  Fly   598 AAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASIQVNAFEHML-----RLNK 657
                               ||:|....:.|...|..:|:.:|.|.::....|:.::     ..::
  Fly   363 -------------------LKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVNSTSE 408

  Fly   658 LVFKSLNFICDCDLVWFQQWLKNRFPQQAEHAVCGYPEHLLDRHLKSLSSSE-LVC-VDSPKPR- 719
            |:.....|||||.|.|..: ||||                 .|||:...|.| |.| :..||.. 
  Fly   409 LLVSDNKFICDCRLQWIFE-LKNR-----------------TRHLQLRDSLEDLHCTLQEPKLSH 455

  Fly   720 -VEQEPDDMLAV-NAANITLECIASSPTAASL 749
             |:..|..:|.| |....|    |....:||:
  Fly   456 FVDPVPPTILDVLNIGGFT----AIGSNSASM 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 41/175 (23%)
leucine-rich repeat 293..316 CDD:275380 6/22 (27%)
LRR_8 316..373 CDD:290566 11/56 (20%)
leucine-rich repeat 317..338 CDD:275380 5/20 (25%)
leucine-rich repeat 339..362 CDD:275380 5/22 (23%)
leucine-rich repeat 363..386 CDD:275380 2/22 (9%)
LRR_8 386..445 CDD:290566 17/58 (29%)
leucine-rich repeat 387..410 CDD:275380 5/22 (23%)
leucine-rich repeat 411..434 CDD:275380 7/22 (32%)
leucine-rich repeat 435..457 CDD:275380 9/22 (41%)
LRR_8 457..516 CDD:290566 21/63 (33%)
leucine-rich repeat 458..481 CDD:275380 8/22 (36%)
leucine-rich repeat 482..505 CDD:275380 8/27 (30%)
LRR_RI <498..669 CDD:238064 39/180 (22%)
LRR_8 504..564 CDD:290566 21/59 (36%)
leucine-rich repeat 506..529 CDD:275380 5/22 (23%)
leucine-rich repeat 530..553 CDD:275380 8/22 (36%)
leucine-rich repeat 554..577 CDD:275380 6/22 (27%)
LRR_8 576..641 CDD:290566 10/64 (16%)
leucine-rich repeat 578..604 CDD:275380 3/25 (12%)
leucine-rich repeat 607..630 CDD:275380 4/22 (18%)
leucine-rich repeat 631..652 CDD:275380 5/20 (25%)
LRRCT 665..712 CDD:214507 17/47 (36%)
IG 734..823 CDD:214652 4/16 (25%)
Ig 735..823 CDD:143165 4/15 (27%)
I-set 834..924 CDD:254352
Ig 851..924 CDD:299845
IG 936..1027 CDD:214652
Ig 961..1020 CDD:143165
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 47/186 (25%)
LRR_8 183..243 CDD:290566 18/72 (25%)
leucine-rich repeat 185..208 CDD:275380 5/22 (23%)
leucine-rich repeat 209..232 CDD:275380 7/22 (32%)
LRR_RI <225..416 CDD:238064 61/248 (25%)
LRR_8 232..291 CDD:290566 20/58 (34%)
leucine-rich repeat 233..256 CDD:275380 9/22 (41%)
leucine-rich repeat 257..280 CDD:275380 8/22 (36%)
leucine-rich repeat 281..304 CDD:275380 6/22 (27%)
LRR_8 304..363 CDD:290566 25/116 (22%)
leucine-rich repeat 305..328 CDD:275380 7/27 (26%)
leucine-rich repeat 329..352 CDD:275380 8/22 (36%)
LRR_8 352..416 CDD:290566 19/116 (16%)
leucine-rich repeat 353..376 CDD:275380 13/75 (17%)
LRRCT 414..>450 CDD:214507 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438701
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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