DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and Lrt

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001286640.1 Gene:Lrt / 37342 FlyBaseID:FBgn0034540 Length:830 Species:Drosophila melanogaster


Alignment Length:825 Identity:189/825 - (22%)
Similarity:314/825 - (38%) Gaps:210/825 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 YPLSASHPPAGVQGSSSSSGISIQSGSLETNGFVADDGGQYEHAQKALEAAAAAAKASNKYNIDC 265
            |.:||:..||.|.|...|...|                |:|.:     :::....||....::..
  Fly    78 YVVSAAAVPALVAGRGKSKSTS----------------GKYVN-----KSSPRKRKAEQVSSLPL 121

  Fly   266 PKD-----CKCLNVL--------FDCDKLH-------LERVPVLPSYVQT----LHLANNKLNDT 306
            |.|     .||.|:.        ..||..|       |..:.:|...::|    :.|.:..|.:.
  Fly   122 PVDDALMEWKCPNITGTRNAELECGCDLPHTLRCNIDLHGMMLLADRLRTSPYSISLLDCSLRNV 186

  Fly   307 TVL---EIRNLLNLTKVSLKRNLLEVIPK--FIGLSG-LKHLVLANNHITSISSESLAALPLLRT 365
            |.|   :|.:.::|..:.:....::.:.|  |:|:.| |:.|.|..|.:.|:...:|:.|..|..
  Fly   187 TFLSDAKIFDNVSLHGLVISSGEIKRVHKSAFLGIRGPLQALGLPGNALMSVPWNALSTLSALER 251

  Fly   366 LDLSRNKLHTIELNSFPKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFK 430
            |||:.||:..:....|....:||:|.||.|:|:::::.:|..|..|..|:|..|||... .:..:
  Fly   252 LDLANNKIKALGTADFVGLTSLVYLELSNNQISSISQRTFVNLRKLEVLKLGGNRLGDY-AQSLR 315

  Fly   431 NLNQ---LKKLALNFNQLE--INWSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMN 490
            :|:|   |::|.|..|.|.  ::..|..|:.::::|.|..|.|:::|:.......::.::.|..|
  Fly   316 SLSQCLSLRQLDLQANNLNGPLSEQTLPGMRNLESLNLNRNLIKSIQNKALANFSRLVSLSLRHN 380

  Fly   491 QISSLSRQGLFNLTKLRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLK 555
            ||..|.....|.|..|..|:||:|.|..|...:.:....|.||||::|.:.......:..|..|:
  Fly   381 QIDVLQDHAFFGLGALDSLDLSYNGIVAISSASLQHLSRLTVLDLTHNFLRALTSDLIAPLPSLR 445

  Fly   556 TLNLAHNRLQYLQENTFDCVKNLEELNLRRNRLS----------WIIEDQ-------SAAAPFKG 603
            .|.||.|.:..:..|..|..:.||.|.::.|.||          |:.|.|       |...|.: 
  Fly   446 ELRLAGNDISIVARNAMDGARELESLQMQENPLSCDCSIRPFAEWLQESQLHSSLSASCVTPPR- 509

  Fly   604 LRKLRRLDLHGNNLKQISTKAMS-GLNNLEILNLGSNALASIQVNAFEHMLRLNK---------- 657
                    |.|..|.|:..:.:| .::|:|..|          .|..:|:..|.|          
  Fly   510 --------LEGAPLLQVPVETLSCDMDNVEKDN----------ANIMQHLETLAKPNQTSPIKDL 556

  Fly   658 ---LVFKSLNFICDCDLVWFQQWLKNR----------FPQQAEH----AVCGYPEHLLDRHLKSL 705
               ::...|:|..|..|:  ..||.|.          |..:.||    .:...|.|...:.:...
  Fly   557 SEEIILHELHFSTDYGLI--LTWLLNLSKKDYMCDAIFVYKEEHINEILIDNSPIHCESKVVNGQ 619

  Fly   706 SSSELVCVDSPKPRV------------EQEPDDMLAVNAANIT-LECIASSPTAASLAA------ 751
            ::..::..||....:            ||:||..|.:..:||| ||  .|||.|..::.      
  Fly   620 NTVSVIVPDSSSLEIGESYRFCLVMIQEQKPDSELNIGCSNITRLE--RSSPGAVPVSRQYQRRP 682

  Fly   752 ---ADELKIKWRHDNQHVQERPAVHDGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCV 813
               |:|||.:            .|||..       .|...||.                 |:..|
  Fly   683 YYNANELKPE------------VVHDAG-------EDYQVNQR-----------------RFNSV 711

  Fly   814 VSN----AFGTTYAQKFKISIGIHPTFLQ-------VPSNLTLDAG-EMARLVCSASGDPTPEIA 866
            |.:    ...:|....:.:...::.:||.       |.|.|.|..| ...|....:||       
  Fly   712 VGSQPQQTQQSTLLHSYTVIDSLNKSFLPGLGLGVLVTSVLVLIWGATRIRQTGGSSG------- 769

  Fly   867 LQKFGGSEFPAATERRLQVIREENAFLITNAKPSDSGIYTCTALS 911
                ||.....:.:.....:...|    .|::|......||.|.|
  Fly   770 ----GGGRNGDSIDSNSSSMHNNN----NNSRPGTPTATTCYAAS 806

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 51/198 (26%)
leucine-rich repeat 293..316 CDD:275380 6/29 (21%)
LRR_8 316..373 CDD:290566 17/59 (29%)
leucine-rich repeat 317..338 CDD:275380 4/22 (18%)
leucine-rich repeat 339..362 CDD:275380 7/22 (32%)
leucine-rich repeat 363..386 CDD:275380 7/22 (32%)
LRR_8 386..445 CDD:290566 21/61 (34%)
leucine-rich repeat 387..410 CDD:275380 9/22 (41%)
leucine-rich repeat 411..434 CDD:275380 7/22 (32%)
leucine-rich repeat 435..457 CDD:275380 7/23 (30%)
LRR_8 457..516 CDD:290566 17/58 (29%)
leucine-rich repeat 458..481 CDD:275380 5/22 (23%)
leucine-rich repeat 482..505 CDD:275380 7/22 (32%)
LRR_RI <498..669 CDD:238064 48/201 (24%)
LRR_8 504..564 CDD:290566 19/59 (32%)
leucine-rich repeat 506..529 CDD:275380 7/22 (32%)
leucine-rich repeat 530..553 CDD:275380 7/22 (32%)
leucine-rich repeat 554..577 CDD:275380 7/22 (32%)
LRR_8 576..641 CDD:290566 19/82 (23%)
leucine-rich repeat 578..604 CDD:275380 11/42 (26%)
leucine-rich repeat 607..630 CDD:275380 5/23 (22%)
leucine-rich repeat 631..652 CDD:275380 3/20 (15%)
LRRCT 665..712 CDD:214507 11/60 (18%)
IG 734..823 CDD:214652 23/102 (23%)
Ig 735..823 CDD:143165 22/101 (22%)
I-set 834..924 CDD:254352 19/86 (22%)
Ig 851..924 CDD:299845 12/61 (20%)
IG 936..1027 CDD:214652
Ig 961..1020 CDD:143165
LrtNP_001286640.1 LRR_RI <151..334 CDD:238064 49/183 (27%)
leucine-rich repeat 179..199 CDD:275378 4/19 (21%)
leucine-rich repeat 200..223 CDD:275380 4/22 (18%)
leucine-rich repeat 225..248 CDD:275380 7/22 (32%)
LRR_8 249..307 CDD:290566 20/57 (35%)
leucine-rich repeat 249..272 CDD:275380 7/22 (32%)
LRR_RI <270..479 CDD:238064 61/209 (29%)
leucine-rich repeat 273..296 CDD:275380 9/22 (41%)
leucine-rich repeat 297..322 CDD:275380 8/25 (32%)
LRR_8 322..382 CDD:290566 14/59 (24%)
leucine-rich repeat 323..347 CDD:275380 7/23 (30%)
leucine-rich repeat 348..371 CDD:275380 5/22 (23%)
LRR_8 370..428 CDD:290566 19/57 (33%)
leucine-rich repeat 372..395 CDD:275380 7/22 (32%)
leucine-rich repeat 396..419 CDD:275380 7/22 (32%)
LRR_8 418..478 CDD:290566 18/59 (31%)
leucine-rich repeat 420..443 CDD:275380 7/22 (32%)
leucine-rich repeat 444..467 CDD:275380 7/22 (32%)
LRRCT 476..526 CDD:214507 13/58 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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