DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and RTN4RL2

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_848665.1 Gene:RTN4RL2 / 349667 HGNCID:23053 Length:420 Species:Homo sapiens


Alignment Length:432 Identity:80/432 - (18%)
Similarity:128/432 - (29%) Gaps:179/432 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   444 HVLVVGDPGIGKSQILQSCANVSPRGIFVCGTNSSN---VGLTVTVRTEKGVG------ASLEAG 499
            |...:.||         ...|...:.:...|||.::   ||:.|.......:|      |::|..
Human   190 HTEAIPDP---------RAVNQDKKNMLFSGTNITSGKAVGVAVATGLHTELGKIRSQMAAVEPE 245

  Fly   500 ALVLADQGVCCIDEFDKMSGHSGLLEVMEQRSVSVAKAGVICTVPARTTVLAAANPAGG------ 558
            ...|..:    :|||.:...|:               ..|||.......:...|:||.|      
Human   246 RTPLQRK----LDEFGRQLSHA---------------ISVICVAVWVINIGHFADPAHGGSWLRG 291

  Fly   559 --HYNK------AKTVSENLKLHPAL-----------LSRFDLV--------------FILLDRS 590
              :|.|      ...:.|.|   ||:           ::|.:.:              .|..|::
Human   292 AVYYFKIAVALAVAAIPEGL---PAVITTCLALGTRRMARKNAIVRSLPSVETLGCTSVICSDKT 353

  Fly   591 NERTDNLLTAHIQKVHGLAKAGSSHLQPQPSHPFFDASGHCSYEEEGEPPLEERLRLAPGEQMDL 655
            ...|.|.::.....|...|.|||..|..      |..|| .:|..|||        :..|:|   
Human   354 GTLTTNQMSVCRMFVVAEADAGSCLLHE------FTISG-TTYTPEGE--------VRQGDQ--- 400

  Fly   656 LPPEIVQKYIGYARKNVQPKLTAKAAEELREFFVELRRAHNHMDMIPVTTRQLEGLIRLTQARAK 720
                                                          ||...|.:||:.|      
Human   401 ----------------------------------------------PVRCGQFDGLVEL------ 413

  Fly   721 IDLSPEATVAHVRDVLAILRQSMLDVFSTDEGDLQFTRLTNGSGTSKTSMVRKFARVLASRSAVT 785
                  ||:.      |:...|.||.   :|....:.::...:.|:.|.:|.|.        .|.
Human   414 ------ATIC------ALCNDSALDY---NEAKGVYEKVGEATETALTCLVEKM--------NVF 455

  Fly   786 GTTLYTMAELRQAMAAGGIVANCNELIDTMNIQGFLLKKGRD 827
            .|.|..::.:.:|.|       ||.:|..:..:.|.|:..||
Human   456 DTDLQALSRVERAGA-------CNTVIKQLMRKEFTLEFSRD 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 49/245 (20%)
leucine-rich repeat 293..316 CDD:275380
leucine-rich repeat 317..338 CDD:275380
leucine-rich repeat 339..362 CDD:275380
leucine-rich repeat 363..386 CDD:275380
leucine-rich repeat 387..410 CDD:275380
leucine-rich repeat 411..434 CDD:275380
leucine-rich repeat 435..457 CDD:275380 3/12 (25%)
leucine-rich repeat 458..481 CDD:275380 4/25 (16%)
leucine-rich repeat 482..505 CDD:275380 5/28 (18%)
leucine-rich repeat 506..529 CDD:275380 4/22 (18%)
leucine-rich repeat 530..553 CDD:275380 3/22 (14%)
leucine-rich repeat 554..577 CDD:275380 9/47 (19%)
leucine-rich repeat 578..604 CDD:275380 5/39 (13%)
leucine-rich repeat 607..630 CDD:275380 7/22 (32%)
leucine-rich repeat 631..652 CDD:275380 5/20 (25%)
LRRCT 665..712 CDD:214507 4/46 (9%)
Ig_3 717..816 CDD:464046 19/98 (19%)
Ig 835..924 CDD:472250
Ig strand B 851..855 CDD:409353
Ig strand C 864..868 CDD:409353
Ig strand E 890..894 CDD:409353
Ig strand F 904..909 CDD:409353
Ig strand G 917..920 CDD:409353
Ig_3 927..1013 CDD:464046
RTN4RL2NP_848665.1 LRR 47..>261 CDD:443914 17/83 (20%)
leucine-rich repeat 62..83 CDD:275380
leucine-rich repeat 84..107 CDD:275380
leucine-rich repeat 108..132 CDD:275380
leucine-rich repeat 133..156 CDD:275380
leucine-rich repeat 157..180 CDD:275380
leucine-rich repeat 181..204 CDD:275380 4/22 (18%)
leucine-rich repeat 205..228 CDD:275380 6/22 (27%)
leucine-rich repeat 229..252 CDD:275380 4/22 (18%)
LRRCT 261..311 CDD:214507 11/64 (17%)
PHA03247 289..>369 CDD:223021 11/82 (13%)
Blue background indicates that the domain is not in the aligned region.

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