DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and CG4168

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001285953.1 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster


Alignment Length:1211 Identity:255/1211 - (21%)
Similarity:424/1211 - (35%) Gaps:367/1211 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 HVSAIKG----RHPTRESNDDSSMVISNYRICDIKTSGNGKYLMSWSRRRRRNNNNNNNSSSNNN 62
            |::.:.|    :|.|..     |:.:|:..|.::...|....::|          .|:|||..::
  Fly   180 HITTLDGNWDAQHDTLR-----SLHLSDNDITEVAPGGGSIEVVS----------QNDNSSQPSS 229

  Fly    63 NAASESRSNDNCNYSTTNDFNKINKLLLITYMLLITAATICQSAAQSPSSSNGNGVGGSGSTGGS 127
            .||.::|      ..|:|..                       ...||||       |..:|||.
  Fly   230 LAAVQTR------LETSNSI-----------------------YPPSPSS-------GDRTTGGR 258

  Fly   128 PLSALLKSGGASYNQQLPQQQLFAMLTRNG----GGSSGPRS-----SGGNRGYTSARQHFMALS 183
            |...|             |:.|:..|:.|.    .|:..|||     ...|......:|.|..|.
  Fly   259 PFEQL-------------QKLLWLDLSNNRIYHVAGNYLPRSLVTMDLSSNLLTVFPQQLFEQLP 310

  Fly   184 E-------DYSDADVDEEDMAALHYPLSASHPPAG---VQGSSSS------SGISIQSGSLETNG 232
            |       |.....|..:::......:.......|   ::...|.      |.:.:::.:||.| 
  Fly   311 ELRIVSLRDNLIRSVQWKELQVRPLRMHLERLDLGQNCIENLESDYFQQNYSDVHLRALNLEQN- 374

  Fly   233 FVADDGGQYEHAQKALEAAAAAAKASNKYNIDCPKDCKCLN---VLFDCDKLHLERVPV------ 288
            ||.    |...|.......|....|.|..:...|...:.|.   ...|.::..|..|||      
  Fly   375 FVT----QLPEAVFKATGIAHLVLAFNAISRVHPSAFEGLTETLEYLDLERNRLTTVPVALSSLH 435

  Fly   289 -----------------LPSYVQTLH---LANNKLNDTTVLEIRNLLNLTKVSLKRNLLEVIPKF 333
                             |||:.:.|.   |:.|..:...||.::|...|:.:::..|.:..||:.
  Fly   436 HLKYLYLTSNQISQLNNLPSFTENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGYNSITDIPEG 500

  Fly   334 IGL-----SGLKHLVLANNHITSISSESLAALPLLRTLDLSRN---------------KLHTIEL 378
            |..     |.|:.::|.||.||.:...|.|.|..::.:.||.|               .|..:||
  Fly   501 IFAVDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIHHPLVFENVSRTLKILEL 565

  Fly   379 N--SFPKS--------------NNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIR 427
            :  .||..              :.|:.|.|..|.:..|:..|||.:..|:.:.||.|:|.|||..
  Fly   566 SFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFNQLKTLPRG 630

  Fly   428 VFKN--LNQLKKLALNFNQLE-INWSTFRGLESMKNLQLKSNKIRA------------------- 470
            :|::  .:.|.::.|::|.|| :...||..|..::.|.|:||::|.                   
  Fly   631 LFQSDAHSHLVEIDLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHAFHNLEFLRYLDLSY 695

  Fly   471 -----LQDGVFYVMHKIETIDLAMNQISSLSRQGLF---NLTKLRHLNLSFNAISRI--EVDTWE 525
                 :..|.|.|:..:..:||..||:.|||.:...   |.|....||:|.|.|:..  |:.::.
  Fly   696 NRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVSHNHIASFYDELSSYM 760

  Fly   526 FTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEELNLRRNRLSW 590
            :   :..||:|:|.:.: .....:..:.|:.||||||:|..||.:.|..::.||.||:..|.|:.
  Fly   761 Y---IYQLDISHNHVTK-SDSFTNLANTLRFLNLAHNQLGSLQSHAFGDLEFLEILNVAHNNLTS 821

  Fly   591 IIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASIQVNAFEHMLRL 655
            :     ....|:||..|:.|||..|.|.|:..:..|.|..|.||.:.||.|.::....|.:    
  Fly   822 L-----RRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLRKLRILRINSNRLRALPREVFMN---- 877

  Fly   656 NKLVFKSLNFICDCDLVWFQQWLKNRFPQ--------QAEHAVCGYPEHLLDRHLKSLSSSELVC 712
            .:|.|..   |.:..|   ..|....|..        |..|....|    ||..: .::|..|..
  Fly   878 TRLEFLD---IAENQL---SVWPVPAFTDIGFTLRSIQMSHNNLEY----LDASM-FINSQFLYD 931

  Fly   713 VDSPKPRVEQEPDDMLAV--NAANITL-----------ECIASSPTAASLA-------AADELKI 757
            :...:.|:...||:..:.  |..|:.|           |....:|....|:       ....||:
  Fly   932 ISLARNRITILPDNTFSFLNNLTNLDLSQNPLVTTNLREVFVHTPRLRKLSLHHMGLYVLPPLKL 996

  Fly   758 -----------------------KWRHDN-------------QHVQ-------------ERPAVH 773
                                   ..||.|             :|:.             .|..:|
  Fly   997 PLLSYLDVSGNYLQELSPLGSLRHLRHVNVSHNKLTNASCAAEHLPPSVRVLDLAHNPLRRITLH 1061

  Fly   774 DGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFGTTYAQKFKISIGIHPTFLQ 838
            |.||    :||....|...:    ::||             ..||....:.: |:....|....:
  Fly  1062 DLAS----LRHLAELNILDV----KVTN-------------PQAFSKLRSLR-KLHASSHANLGE 1104

  Fly   839 VPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSEFPAATERRLQVIREENAFLITNAKPSDSG 903
            :.:.  :...:..|:.|.     .|.|..|.|  ::....|:.||..:...|...|.      ..
  Fly  1105 IVAR--IPGLQQLRVHCL-----EPNIGQQLF--AKLANNTKIRLLELYGSNVQTIA------PD 1154

  Fly   904 IYTCTALSAAGEIKVNATLV----------VNDKPQPSIPLVHQEV----------------VVG 942
            ::|..:.|...::|::.|.:          :.:.|..||.:.|..:                .||
  Fly  1155 VFTGLSRSQRLQVKISHTRISDLPPGIFYALREVPHLSIDISHNRINALAADSFYPNKSYWDAVG 1219

  Fly   943 RTCVLQCLSETANADFELE-------HPHREWFKENKPIHI 976
            ...::..|. |::...|.|       |..|.|.:|:..|.:
  Fly  1220 TRSIMGGLI-TSHNPLECECGLVWFGHWLRRWLRESAQIKV 1259

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 57/234 (24%)
leucine-rich repeat 293..316 CDD:275380 6/25 (24%)
LRR_8 316..373 CDD:290566 18/76 (24%)
leucine-rich repeat 317..338 CDD:275380 5/25 (20%)
leucine-rich repeat 339..362 CDD:275380 9/22 (41%)
leucine-rich repeat 363..386 CDD:275380 8/53 (15%)
LRR_8 386..445 CDD:290566 20/60 (33%)
leucine-rich repeat 387..410 CDD:275380 8/22 (36%)
leucine-rich repeat 411..434 CDD:275380 9/24 (38%)
leucine-rich repeat 435..457 CDD:275380 8/22 (36%)
LRR_8 457..516 CDD:290566 21/85 (25%)
leucine-rich repeat 458..481 CDD:275380 8/46 (17%)
leucine-rich repeat 482..505 CDD:275380 8/25 (32%)
LRR_RI <498..669 CDD:238064 51/175 (29%)
LRR_8 504..564 CDD:290566 18/61 (30%)
leucine-rich repeat 506..529 CDD:275380 6/24 (25%)
leucine-rich repeat 530..553 CDD:275380 4/22 (18%)
leucine-rich repeat 554..577 CDD:275380 11/22 (50%)
LRR_8 576..641 CDD:290566 23/64 (36%)
leucine-rich repeat 578..604 CDD:275380 7/25 (28%)
leucine-rich repeat 607..630 CDD:275380 9/22 (41%)
leucine-rich repeat 631..652 CDD:275380 7/20 (35%)
LRRCT 665..712 CDD:214507 11/54 (20%)
IG 734..823 CDD:214652 23/155 (15%)
Ig 735..823 CDD:143165 22/154 (14%)
I-set 834..924 CDD:254352 15/99 (15%)
Ig 851..924 CDD:299845 15/82 (18%)
IG 936..1027 CDD:214652 12/64 (19%)
Ig 961..1020 CDD:143165 6/23 (26%)
CG4168NP_001285953.1 leucine-rich repeat 99..118 CDD:275380