DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and Lgr6

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001405234.1 Gene:Lgr6 / 329252 MGIID:2441805 Length:1004 Species:Mus musculus


Alignment Length:811 Identity:196/811 - (24%)
Similarity:302/811 - (37%) Gaps:195/811 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 CPKDCKC----LNVLFDCDKLHLERVPV----LPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVS 321
            ||..|.|    :.:..||.:|.|..||.    |.:|   |.|:.|.|.:.......:|..|.::.
Mouse    35 CPAPCHCQEDGIMLSADCSELGLSVVPADLDPLTAY---LDLSMNNLTELQPGLFHHLRFLEELR 96

  Fly   322 LKRNLLEVIP--KFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKS 384
            |..|.|..||  .|.||..||.|:|.:|.:..|.:|:|..||.|::|.|..|.:..:...||...
Mouse    97 LSGNHLSHIPGQAFSGLHSLKILMLQSNQLRGIPAEALWELPSLQSLRLDANLISLVPERSFEGL 161

  Fly   385 NNLVHL------------------------ILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLP 425
            ::|.||                        .|:.|.|.::.:::|..|.:|..|.|.|||:..:.
Mouse   162 SSLRHLWLDDNALTEIPVRALNNLPALQAMTLALNHIRHIPDYAFQNLTSLVVLHLHNNRIQHVG 226

  Fly   426 IRVFKNLNQLKKLA-------------------------------------LNFNQLEINWSTFR 453
            ...|:.|:.|:.|.                                     ||:|:|:......|
Mouse   227 THSFEGLHNLETLVFFLFCSPERFLGEPAGEGRCGGGGAAARMKGGRNDRDLNYNELQEFPLAIR 291

  Fly   454 GLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTKLRHLNLSFNAISR 518
            .|..::.|...:|.|:|:.:..|.....::||....|.|..:.|.....|:||.  .||.|..:.
Mouse   292 TLGRLQELGFHNNNIKAIPEKAFMGSPLLQTIHFYDNPIQFVGRSAFQYLSKLH--TLSLNGATD 354

  Fly   519 IEVDTWEF-----TQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNL 578
            |:    ||     |.|||:|.|:...|....|.....|.||:.|.|:||:::.| .:...|.| |
Mouse   355 IQ----EFPDLKGTTSLEILTLTRAGIRLLPPGVCQQLPRLRILELSHNQIEEL-PSLHRCQK-L 413

  Fly   579 EELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALAS 643
            ||:.||.||:..|     .|..|..|..|:.|||..|.::.|..:|.|.|.:|..|:|..|.|.:
Mouse   414 EEIGLRHNRIKEI-----GADTFSQLGSLQALDLSWNAIRAIHPEAFSTLRSLVKLDLTDNQLTT 473

  Fly   644 IQVNAFEHMLRL------------NKLVFKSLNF-------------ICDCDLVWFQQWLKNRFP 683
            :.:.....::.|            :|..|..|..             ||........||....|.
Mouse   474 LPLAGLGGLMHLKLKGNLALSQAFSKDSFPKLRILEVPYAYQCCAYGICASFFKTSGQWQAEDFH 538

  Fly   684 QQAEHA-------VCGYPEHLLDRHLKSLSSSELVCVDS-PKPRVEQEP---------------D 725
            .:.|.|       :.|..|:..|..|..|   ::...|| |.|.|:..|               .
Mouse   539 PEEEEAPKRPLGLLAGQAENHYDLDLDEL---QMGTEDSKPHPSVQCSPVPGPFKPCEHLFESWG 600

  Fly   726 DMLAVNA---------ANITLECIASSPTAAS--------LAAADELKIKWRHDNQHVQERPAVH 773
            ..|||.|         ..:.|...||.|:..|        :|.|:.|.              .:.
Mouse   601 IRLAVWAIVLLSVLCNGLVLLTVFASGPSPLSPVKLVVGAMAGANALS--------------GIS 651

  Fly   774 DG--ASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNA---FGTTYAQKFKISIGIH 833
            .|  ||.:.     |:..|.:.||....:.:..::.|....:.|.|   ..|..|.:..||:...
Mouse   652 CGLLASVDA-----LTYGQFAEYGARWESGLGCQATGFLAVLGSEASVLLLTLAAVQCSISVTCV 711

  Fly   834 PTFLQVPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSE--FP-AATERRLQVIREENAFLIT 895
            ..:.:.||..::.||.:..|..:......|..::.::|.|.  .| |..|.|...:....|.::.
Mouse   712 RAYGKAPSPGSVRAGALGCLALAGLAAALPLASVGEYGASPLCLPYAPPEGRPAALGFAVALVMM 776

  Fly   896 NAKPSDSGIYTCTALSAAGEIKVNATLVVND 926
            |:        .|..:.|...||:...|...|
Mouse   777 NS--------LCFLVVAGAYIKLYCDLPRGD 799

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 115/416 (28%)
leucine-rich repeat 293..316 CDD:275380 5/22 (23%)
leucine-rich repeat 317..338 CDD:275380 9/22 (41%)
leucine-rich repeat 339..362 CDD:275380 9/22 (41%)
leucine-rich repeat 363..386 CDD:275380 6/22 (27%)
leucine-rich repeat 387..410 CDD:275380 8/46 (17%)
leucine-rich repeat 411..434 CDD:275380 8/22 (36%)
leucine-rich repeat 435..457 CDD:275380 8/58 (14%)
leucine-rich repeat 458..481 CDD:275380 5/22 (23%)
leucine-rich repeat 482..505 CDD:275380 6/22 (27%)
leucine-rich repeat 506..529 CDD:275380 8/27 (30%)
leucine-rich repeat 530..553 CDD:275380 7/22 (32%)
leucine-rich repeat 554..577 CDD:275380 7/22 (32%)
leucine-rich repeat 578..604 CDD:275380 10/25 (40%)
leucine-rich repeat 607..630 CDD:275380 9/22 (41%)
leucine-rich repeat 631..652 CDD:275380 5/20 (25%)
LRRCT 665..712 CDD:214507 12/66 (18%)
Ig_3 717..816 CDD:464046 23/132 (17%)
Ig 835..924 CDD:472250 19/91 (21%)
Ig strand B 851..855 CDD:409353 1/3 (33%)
Ig strand C 864..868 CDD:409353 0/3 (0%)
Ig strand E 890..894 CDD:409353 1/3 (33%)
Ig strand F 904..909 CDD:409353 1/4 (25%)
Ig strand G 917..920 CDD:409353 1/2 (50%)
Ig_3 927..1013 CDD:464046 196/811 (24%)
Lgr6NP_001405234.1 LRR <51..350 CDD:443914 77/303 (25%)
leucine-rich repeat 70..91 CDD:275380 6/23 (26%)
leucine-rich repeat 92..115 CDD:275380 9/22 (41%)
leucine-rich repeat 116..139 CDD:275380 9/22 (41%)
leucine-rich repeat 140..163 CDD:275380 6/22 (27%)
leucine-rich repeat 164..187 CDD:275380 3/22 (14%)
leucine-rich repeat 188..211 CDD:275380 5/22 (23%)
leucine-rich repeat 212..235 CDD:275380 8/22 (36%)
leucine-rich repeat 236..295 CDD:275380 8/58 (14%)
LRR 277..>508 CDD:443914 72/243 (30%)
leucine-rich repeat 296..319 CDD:275380 5/22 (23%)
leucine-rich repeat 320..341 CDD:275380 5/20 (25%)
leucine-rich repeat 344..385 CDD:275380 15/46 (33%)
leucine-rich repeat 391..412 CDD:275380 7/21 (33%)
leucine-rich repeat 413..436 CDD:275380 11/27 (41%)
leucine-rich repeat 437..458 CDD:275380 8/20 (40%)
leucine-rich repeat 461..481 CDD:275380 5/19 (26%)
7tmA_LGR6 599..875 CDD:320484 46/228 (20%)
TM helix 1 600..626 CDD:320484 5/25 (20%)
TM helix 2 634..659 CDD:320484 6/38 (16%)
TM helix 3 679..709 CDD:320484 7/29 (24%)
TM helix 4 721..743 CDD:320484 4/21 (19%)
TM helix 5 765..794 CDD:320484 6/36 (17%)
TM helix 6 803..833 CDD:320484
TM helix 7 843..868 CDD:320484
Blue background indicates that the domain is not in the aligned region.

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