DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and Lrig1

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:XP_232237.6 Gene:Lrig1 / 312574 RGDID:1306788 Length:1096 Species:Rattus norvegicus


Alignment Length:1065 Identity:327/1065 - (30%)
Similarity:525/1065 - (49%) Gaps:125/1065 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 AAAAKASNKYNIDCPKDCKCLNVLFDCDKLHLERVP-VLPSYVQTLHLANNKLNDTTVLEIRNLL 315
            :|.|:|..:  ..|...|.|.....||....|..:| .:||:.::|:|:.|:|::.......:|.
  Rat    35 SAVAQAGPR--APCAAACTCAGDSLDCSGRGLATLPRDMPSWTRSLNLSYNRLSEIDPAAFEDLT 97

  Fly   316 NLTKVSLKRNLLEVIPKFIGLSGLKHLV---LANNHITSISSESLAALPLLRTLDLSRNKLHTIE 377
            ||.:|.|..|.|..:|. :|.:.: |:|   |.:|.|.|:....|.:...|..||||.|.:..|.
  Rat    98 NLQEVYLNSNELTAVPS-LGAASM-HVVSLFLQHNKILSVDGSQLKSYLSLEVLDLSSNNITEIR 160

  Fly   378 LNSFPKSNNLVHLILSFNEITNVNEHSFATLN-NLTDLELSNNRLSTLPIRVFKNLNQLKKLALN 441
            .:.||....:..|.|:.|.|:.:...:|..|: :|..|.||.||::.||::.|| |.:|.:|.||
  Rat   161 SSCFPNGLRVRELNLASNRISILESGAFDGLSRSLLTLRLSKNRITQLPVKAFK-LPRLTQLDLN 224

  Fly   442 FNQLE-INWSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTK 505
            .|::. |...||:||:|::.|:|:.|.:..|.||.|:.:.|:..:.|..|.:..::...|:.||.
  Rat   225 RNRIRLIEGLTFQGLDSLEVLKLQRNNLSKLTDGAFWGLSKMHVLHLEYNSLVEVNSGSLYGLTA 289

  Fly   506 LRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQEN 570
            |..|:||.|:||||:.|.|.|.|.|..|.||.|.:.....:.|..|..|..|.|:||.:.::.|.
  Rat   290 LHQLHLSNNSISRIQRDGWSFCQKLHELILSFNNLTRLDEESLAELSGLSILRLSHNAISHIAEG 354

  Fly   571 TFDCVKNLEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILN 635
            .|..:|:|..|.|..|.:|..|||.|.|  |.||..|.:|.|.||.:|.::.:|.|||.|||.||
  Rat   355 AFKGLKSLRVLELDHNEISGTIEDTSGA--FMGLDNLSKLTLFGNKIKSVAKRAFSGLENLEHLN 417

  Fly   636 LGSNALASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKNRFPQQAEHAVCGYPEHLLDR 700
            ||.||:.|||.:||..|..|.:|...|.:|:|||.|.|...||.:|..|....|.|.:||.|..:
  Rat   418 LGENAIRSIQFDAFAKMKNLKELYISSESFLCDCQLKWLPPWLVSRMLQAFVTATCAHPESLKGQ 482

  Fly   701 HLKSLSSSELVCVDSPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAAADELKIKWRHDNQ- 764
            .:.|:.....||.|.|||::..:|:..:||...:|...|.|:|.:::.:..|      |:.||: 
  Rat   483 SIFSVLPDSFVCDDFPKPQIITQPETTMAVVGKDIRFTCSAASSSSSPMTFA------WKKDNEV 541

  Fly   765 ----------HVQERPAVHDGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFG 819
                      ||:    ..||...|          .|:|   |.|.:||:...||||||::|.||
  Rat   542 LTNADMENFAHVR----AQDGEVME----------YTTI---LHLRHVTFGHEGRYQCVITNHFG 589

  Fly   820 TTYAQKFKISIGIHPTFLQVPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSEFPAATERRLQ 884
            :||:.|.::::.:.|:|.::|.::.:..|..|||.|:|:|.|.|:||.||.||::||||.|||:.
  Rat   590 STYSHKARLTVNVLPSFTKIPHDIAIRTGTTARLECAATGHPNPQIAWQKDGGTDFPAARERRMH 654

  Fly   885 VIREENAFLITNAKPSDSGIYTCTALSAAGEIKVNATLVVNDKPQPSIPLVHQEVVVGRTCVLQC 949
            |:.:::.|.||:.|..|.|:|:|||.::||.:..||||.|.:.|..::||..:.|.||.|...||
  Rat   655 VMPDDDVFFITDVKVDDMGVYSCTAQNSAGSVSANATLTVLETPSLAVPLEDRVVTVGETVAFQC 719

  Fly   950 LSETANADFELEHPHREWFKENKPIHISPTAPDGDRYYFSNNKELLVILNAQSNDAGHFRCEITD 1014
            .:..:..      |...|.|..:|:.::      :|::|:...:|||:.|.::.|||.:.||:::
  Rat   720 KATGSPT------PRITWLKGGRPLSLT------ERHHFTPGNQLLVVQNVEAEDAGRYTCEMSN 772

  Fly  1015 NSRTFTLQSELVVV------KENLNWVVLLVGIITVTVICVVVDCCIIWCTLRYQKKKLRMSLAA 1073
            ...|....|:|.::      |:...     |||.|:.|:|.:|...::|..:.||.:|.....:.
  Rat   773 PLGTERAHSQLSILPTPGCRKDGST-----VGIFTIAVVCSIVLTSLVWVCIIYQTRKKSEEYSV 832

  Fly  1074 ERHSTQLRPRSLADLGCSYDEANHRRLTVMSTPPSEQ--------------------------RC 1112
            ......:.|..:.....|....:.|:.||:.|....|                          .|
  Rat   833 TNTDETIVPPDVPSYLSSQGTLSDRQETVVRTEGGPQANGHIESNGVCLRDPSLFPEVDVHSFAC 897

  Fly  1113 LEQGLTLSYLRQT-DLEAQQDHLSSKDSGTGSDAAVKRTLDDFEVAMPSHKHHTDDEEEEEVEEV 1176
            .:..|.:.|.|:. .:..:.|..::......|.:||.........:.|       .|:....:.|
  Rat   898 RQPKLCVGYTREPWKVTEKADRTTAPHPTAHSGSAVCSDCRSDTASQP-------QEQAFHPQTV 955

  Fly  1177 YEENEPPYIKHTYEVNYAEPEQHLFLQNNNHNYDG---GGIGVAGGV------NKMVPNALLRKC 1232
            ..::..|....:.|:     .||....:.:|.|.|   |...::||.      ::::|:  ||..
  Rat   956 PRDSGQPGTSSSQEL-----RQHDRECSPHHPYSGTVDGPHALSGGSLYPSNHDRILPS--LRNK 1013

  Fly  1233 SAGASGSNYSS-----IQQCTTVDI 1252
            :|.|.|...||     :|:...:|:
  Rat  1014 AACADGKGDSSWTLAKLQEADCIDL 1038

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 57/175 (33%)
leucine-rich repeat 293..316 CDD:275380 5/22 (23%)
LRR_8 316..373 CDD:290566 21/59 (36%)
leucine-rich repeat 317..338 CDD:275380 7/20 (35%)
leucine-rich repeat 339..362 CDD:275380 7/25 (28%)
leucine-rich repeat 363..386 CDD:275380 9/22 (41%)
LRR_8 386..445 CDD:290566 22/59 (37%)
leucine-rich repeat 387..410 CDD:275380 6/23 (26%)
leucine-rich repeat 411..434 CDD:275380 11/22 (50%)
leucine-rich repeat 435..457 CDD:275380 10/22 (45%)
LRR_8 457..516 CDD:290566 19/58 (33%)
leucine-rich repeat 458..481 CDD:275380 7/22 (32%)
leucine-rich repeat 482..505 CDD:275380 4/22 (18%)
LRR_RI <498..669 CDD:238064 74/170 (44%)
LRR_8 504..564 CDD:290566 26/59 (44%)
leucine-rich repeat 506..529 CDD:275380 12/22 (55%)
leucine-rich repeat 530..553 CDD:275380 7/22 (32%)
leucine-rich repeat 554..577 CDD:275380 7/22 (32%)
LRR_8 576..641 CDD:290566 32/64 (50%)
leucine-rich repeat 578..604 CDD:275380 11/25 (44%)
leucine-rich repeat 607..630 CDD:275380 10/22 (45%)
leucine-rich repeat 631..652 CDD:275380 13/20 (65%)
LRRCT 665..712 CDD:214507 16/46 (35%)
IG 734..823 CDD:214652 29/99 (29%)
Ig 735..823 CDD:143165 29/98 (30%)
I-set 834..924 CDD:254352 42/89 (47%)
Ig 851..924 CDD:299845 38/72 (53%)
IG 936..1027 CDD:214652 24/90 (27%)
Ig 961..1020 CDD:143165 16/58 (28%)
Lrig1XP_232237.6 LRR_8 76..132 CDD:290566 17/57 (30%)
LRR_4 76..115 CDD:289563 12/39 (31%)
leucine-rich repeat 76..98 CDD:275380 5/21 (24%)
leucine-rich repeat 99..114 CDD:275380 5/14 (36%)
leucine-rich repeat 122..145 CDD:275380 6/22 (27%)
LRR_RI 138..421 CDD:238064 109/285 (38%)
LRR_8 145..228 CDD:290566 31/83 (37%)
leucine-rich repeat 146..169 CDD:275380 9/22 (41%)
leucine-rich repeat 170..193 CDD:275380 6/22 (27%)
leucine-rich repeat 194..217 CDD:275380 11/23 (48%)
LRR_8 216..276 CDD:290566 21/59 (36%)
leucine-rich repeat 218..241 CDD:275380 10/22 (45%)
leucine-rich repeat 242..265 CDD:275380 7/22 (32%)
LRR_8 264..324 CDD:290566 24/59 (41%)
leucine-rich repeat 266..289 CDD:275380 4/22 (18%)
leucine-rich repeat 290..313 CDD:275380 12/22 (55%)
LRR_8 313..372 CDD:290566 19/58 (33%)
leucine-rich repeat 314..337 CDD:275380 7/22 (32%)
leucine-rich repeat 338..361 CDD:275380 7/22 (32%)
leucine-rich repeat 362..386 CDD:275380 11/25 (44%)
LRR_8 388..444 CDD:290566 27/55 (49%)
leucine-rich repeat 389..412 CDD:275380 10/22 (45%)
LRR_4 411..>444 CDD:289563 17/32 (53%)
leucine-rich repeat 413..434 CDD:275380 13/20 (65%)
LRRCT 447..495 CDD:214507 17/47 (36%)
I-set 500..600 CDD:254352 35/122 (29%)
Ig 517..591 CDD:143165 28/96 (29%)
I-set 604..694 CDD:254352 42/89 (47%)
Ig_1 621..695 CDD:143240 38/73 (52%)
I-set 698..785 CDD:254352 27/98 (28%)
IGc2 712..775 CDD:197706 19/74 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342110
Domainoid 1 1.000 101 1.000 Domainoid score I6761
eggNOG 1 0.900 - - E2759_KOG4194
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 483 1.000 Inparanoid score I1396
OMA 1 1.010 - - QHG49439
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001817
OrthoInspector 1 1.000 - - otm46457
orthoMCL 1 0.900 - - OOG6_104558
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1179
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.760

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