DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and Lrrn3

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_034863.1 Gene:Lrrn3 / 16981 MGIID:106036 Length:707 Species:Mus musculus


Alignment Length:747 Identity:162/747 - (21%)
Similarity:290/747 - (38%) Gaps:161/747 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 AAAAAAKASNKYNIDCPKDCKC-LNVLF------------DCDKLHLERVPV-LPSYVQTLHLAN 300
            |.....:|.:| .:|||:.|.| :...|            ||:.|.|...|. ||:         
Mouse    15 AITTLVQAIDK-KVDCPQLCTCEIRPWFTPRSIYMEASTVDCNDLGLLNFPARLPA--------- 69

  Fly   301 NKLNDTTVLEIRNLLNLTKVSLKRNLLEVIPKFIGLSGLKHLVLANNHITSISSESLAALPL-LR 364
                ||.:                                 |:|..|:|..|  |.....|: |.
Mouse    70 ----DTQI---------------------------------LLLQTNNIARI--EHSTDFPVNLT 95

  Fly   365 TLDLSRNKLHTIELNSFPKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVF 429
            .||||:|.|.::...:..|.:.|:.:.|..|::|.:.|.....|:||.:|.:::|.|||:....|
Mouse    96 GLDLSQNNLSSVTNINVQKMSQLLSVYLEENKLTELPEKCLYGLSNLQELYVNHNLLSTISPGAF 160

  Fly   430 KNLNQLKKLALNFNQLE-INWSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQIS 493
            ..|:.|.:|.||.|:|: ||...|..|.:::.|.|..|.|..::|..|..:.|:.::.:|...::
Mouse   161 IGLHNLLRLHLNSNRLQMINSQWFDALPNLEILMLGDNPIIRIKDMNFQPLVKLRSLVIAGINLT 225

  Fly   494 SLSRQGLFNLTKLRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLN 558
            .:....|..|..|..::...|.:|::.....:...:|:.|||:.|.||.                
Mouse   226 EIPDDALAGLENLESISFYDNRLSKVPQVALQKAVNLKFLDLNKNPINR---------------- 274

  Fly   559 LAHNRLQYLQENTFDCVKNLEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGN-NLKQIST 622
                    ::...|..:.:|:||.:  |.:..::...|.|.  ..|..||:::...| .|..|..
Mouse   275 --------IRRGDFSNMLHLKELGI--NNMPELVSIDSLAV--DNLPDLRKIEATNNPRLSYIHP 327

  Fly   623 KAMSGLNNLEILNLGSNALASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKN-RFPQQA 686
            .|...|..||.|.|.:|||:::.....|.:..|.::...|....|||.:.|......| || .:.
Mouse   328 NAFFRLPKLESLMLNTNALSALYHGTIESLPNLKEISIHSNPIRCDCVIRWINMNKTNIRF-MEP 391

  Fly   687 EHAVCGYPEHLLDRHLKSLSSSELVCVDSPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAA 751
            :...|..|.....::::.:...:::.:..|....|..|.|:.....:.::|.|.|:        |
Mouse   392 DSLFCVDPPEFQGQNVRQVHFRDMMEICLPLIAPESFPSDLDVEADSYVSLHCRAT--------A 448

  Fly   752 ADELKIKWRHDN------QHVQERPAVHDGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRY 810
            ..:.:|.|...:      ..::|:..||.                   .|.|.:..:|.:..|.|
Mouse   449 EPQPEIYWITPSGKKLLPNTMREKFYVHS-------------------EGTLEIRGITPKEGGLY 494

  Fly   811 QCVVSNAFGTTYAQKFKISIGIHPTFLQVPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSEF 875
            .|:.:|..|.. .:...|.:|     ..||.:.........|.:.:.|      :.:.....|:.
Mouse   495 TCIATNLVGAD-LKSIMIKVG-----GSVPQDNNGSLNIKIRDIRANS------VLVSWKASSKI 547

  Fly   876 PAATERRLQVIREENAFLITNAK-PSDSGIYTCTALSAAGEIKVNATLVVNDKPQPSIPLVHQEV 939
            ..::.:....::.|::....:|: |.|..:|..|.|..:.|.|:..          .||.|:|: 
Mouse   548 LKSSVKWTAFVKTEDSHAAQSARIPFDVKVYNLTHLKPSTEYKICI----------DIPTVYQK- 601

  Fly   940 VVGRTCVLQCLSETANADFELEHPHREWFKEN 971
              .|.   ||::.|..:   |||..:|:.|.:
Mouse   602 --SRK---QCVNVTTKS---LEHDGKEYGKNH 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 83/351 (24%)
leucine-rich repeat 293..316 CDD:275380 2/22 (9%)
leucine-rich repeat 317..338 CDD:275380 0/20 (0%)
leucine-rich repeat 339..362 CDD:275380 6/22 (27%)
leucine-rich repeat 363..386 CDD:275380 8/22 (36%)
leucine-rich repeat 387..410 CDD:275380 6/22 (27%)
leucine-rich repeat 411..434 CDD:275380 8/22 (36%)
leucine-rich repeat 435..457 CDD:275380 10/22 (45%)
leucine-rich repeat 458..481 CDD:275380 6/22 (27%)
leucine-rich repeat 482..505 CDD:275380 3/22 (14%)
leucine-rich repeat 506..529 CDD:275380 3/22 (14%)
leucine-rich repeat 530..553 CDD:275380 7/22 (32%)
leucine-rich repeat 554..577 CDD:275380 1/22 (5%)
leucine-rich repeat 578..604 CDD:275380 6/25 (24%)
leucine-rich repeat 607..630 CDD:275380 7/23 (30%)
leucine-rich repeat 631..652 CDD:275380 8/20 (40%)
LRRCT 665..712 CDD:214507 9/47 (19%)
Ig_3 717..816 CDD:464046 18/104 (17%)
Ig 835..924 CDD:472250 14/89 (16%)
Ig strand B 851..855 CDD:409353 1/3 (33%)
Ig strand C 864..868 CDD:409353 0/3 (0%)
Ig strand E 890..894 CDD:409353 0/3 (0%)
Ig strand F 904..909 CDD:409353 1/4 (25%)
Ig strand G 917..920 CDD:409353 1/2 (50%)
Ig_3 927..1013 CDD:464046 13/45 (29%)
Lrrn3NP_034863.1 LRRNT 28..72 CDD:214470 14/56 (25%)
LRR 1 70..91 8/55 (15%)
leucine-rich repeat 72..93 CDD:275380 7/55 (13%)
LRR 76..>370 CDD:443914 84/323 (26%)
LRR 2 93..114 7/20 (35%)
leucine-rich repeat 94..117 CDD:275380 8/22 (36%)
LRR 3 117..138 5/20 (25%)
leucine-rich repeat 118..141 CDD:275380 6/22 (27%)
LRR 4 141..162 8/20 (40%)
leucine-rich repeat 142..165 CDD:275380 8/22 (36%)
LRR 5 165..186 9/20 (45%)
leucine-rich repeat 166..189 CDD:275380 10/22 (45%)
LRR 6 189..210 6/20 (30%)
leucine-rich repeat 190..213 CDD:275380 6/22 (27%)
LRR 7 213..234 3/20 (15%)
leucine-rich repeat 214..237 CDD:275380 3/22 (14%)
LRR 8 237..258 3/20 (15%)
leucine-rich repeat 238..261 CDD:275380 3/22 (14%)
LRR 9 261..282 8/44 (18%)
leucine-rich repeat 262..285 CDD:275380 8/46 (17%)
LRR 10 285..304 5/20 (25%)
leucine-rich repeat 286..310 CDD:275380 7/27 (26%)
LRR 11 310..332 6/21 (29%)
leucine-rich repeat 311..333 CDD:275380 6/21 (29%)
LRR 12 335..358 8/22 (36%)
leucine-rich repeat 336..359 CDD:275380 8/22 (36%)
PCC 341..>405 CDD:188093 16/64 (25%)
Ig_3 427..500 CDD:464046 17/99 (17%)
fn3 526..593 CDD:394996 12/72 (17%)

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