DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and lrrn3b

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:XP_009298331.1 Gene:lrrn3b / 100535105 ZFINID:ZDB-GENE-170217-3 Length:706 Species:Danio rerio


Alignment Length:782 Identity:175/782 - (22%)
Similarity:282/782 - (36%) Gaps:203/782 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   248 LEAAAAAAKASNKYNIDCPKDCKC-LNVLF------------DCDKLHLERVPV-LPSYVQTLHL 298
            |..|.....|..|  |.|||.|.| :...|            ||:.|.|.::|. ||.       
Zfish    14 LAMATFVIAAEEK--ISCPKLCVCEIRPWFSPSSVYMEAPTIDCNDLGLFKLPTRLPL------- 69

  Fly   299 ANNKLNDTTVLEIRNLLNLTKVSLKRNLLEVIPKFIGLSGLKHLVLANNHITSISSESLAALPLL 363
                  ||.||    ||....::...:.|:.      |:.:..:.|:.|:::||:..::.:||.|
Zfish    70 ------DTQVL----LLQTNNIAKNEHPLDY------LTNITEIDLSQNNLSSINDINIGSLPQL 118

  Fly   364 RTLDLSRNKLHTIELNSFPKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRV 428
            .:|.:..|.:.::..||..:..||..|.|:.|.|:.::..:|..|.:|..|.|::|||..:....
Zfish   119 LSLHMEENWICSLPDNSLSQLTNLQELYLNHNLISLISPEAFRGLQSLLRLHLNSNRLQIIKSEW 183

  Fly   429 FKNLNQLKKLALNFNQ-LEINWSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQI 492
            |:.|..|:.|.:..|. |.|....|:.|.::::|.|....:..:.|..|..:..:|:|....|..
Zfish   184 FEPLPNLEILMIGENPVLSIQDMNFKPLRNLRSLVLTRMNLSQIPDDSFLGLDNLESISFYDNTF 248

  Fly   493 SSLSRQGLFNLTKLRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNN------AINEFKPQHLDCL 551
            ..:....|.:|..|:.|:|:.|.|.||:  ..:|...|.:.:|..|      :|:.|...:|..|
Zfish   249 PKVPHGALRHLKSLKFLDLNKNPIGRIQ--RGDFVDMLHLKELGINSMPELVSIDSFALNNLPEL 311

  Fly   552 HRLKTLNLAHNRLQYLQENTFDCVKNLEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNN 616
            .:::..|  :.:|.|:..|.|..:..||.|.|..|.||.:     .....:.|..||.:.:|.|.
Zfish   312 TKIEATN--NPKLSYIHPNAFYRLPRLETLMLNGNALSAL-----HRITVESLPNLREVSMHSNP 369

  Fly   617 LKQISTKAMSGLNNLEILNLGSNALASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKN- 680
            ::                                                |||.:.|......| 
Zfish   370 IR------------------------------------------------CDCVVRWMNMNKTNI 386

  Fly   681 RFPQQAEHAVCGYPEHLLDRHLKSLSSSELVCVDSPKPRVEQEPDDMLAVNAANITLECIASSPT 745
            || .:.:...|..|.....:|::.:...|::.:..|....|..|..:......:::|.|.|    
Zfish   387 RF-MEPDSLFCVEPPEYEGQHVRQVHFREMMEICLPLISSESLPTQISMDRGRSVSLHCRA---- 446

  Fly   746 AASLAAADELKIKW------RHDNQHVQERPAVHDGASTETQIRHDLSTNQTSIYGYLRLTNVTY 804
                .|..|..|.|      |.....|.||..:|.                   .|.|.:.::|.
Zfish   447 ----FAEPEPDIYWVTPSGRRVIPNAVFERFYMHP-------------------EGTLDIYDITE 488

  Fly   805 ESAGRYQCVVSNAFGTTYAQKFKISIGIHPTFLQVPSNLTLDAG------EMARLVCSAS-GDPT 862
            ..||.|.||..|..|   |....:|:.::..|.| |.|.:|...      ....:...|| |...
Zfish   489 NEAGLYTCVAHNLVG---ADLKSVSVQVNGYFPQ-PVNDSLYVSVQSVQTHSVLITWKASHGSLA 549

  Fly   863 PEIALQKFGGSEFPAATERRLQVIREENAFLITNAKPSDSGIYTCTALSAAGEIKVNATL----- 922
            |.|......|:.:|..            ||  |...|||..:|..|.||.|.:.||...:     
Zfish   550 PNIKWYTMPGANYPTV------------AF--TARVPSDVTLYNLTHLSPATQYKVCVDIHSVHR 600

  Fly   923 ----------------VVNDKPQPSIPLVHQ----EVVVGRTCVL---------------QCLSE 952
                            :|||.....:.|:..    .:|:...|.|               :|.|.
Zfish   601 NHDTKCVNVLTKGLEQIVNDSESWDMALIAAFGVLFIVMSVACFLIYMFMRNHCIYGELKRCPSN 665

  Fly   953 TA 954
            ||
Zfish   666 TA 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 83/355 (23%)
leucine-rich repeat 293..316 CDD:275380 5/22 (23%)
leucine-rich repeat 317..338 CDD:275380 2/20 (10%)
leucine-rich repeat 339..362 CDD:275380 5/22 (23%)
leucine-rich repeat 363..386 CDD:275380 5/22 (23%)
leucine-rich repeat 387..410 CDD:275380 7/22 (32%)
leucine-rich repeat 411..434 CDD:275380 8/22 (36%)
leucine-rich repeat 435..457 CDD:275380 7/22 (32%)
leucine-rich repeat 458..481 CDD:275380 4/22 (18%)
leucine-rich repeat 482..505 CDD:275380 5/22 (23%)
leucine-rich repeat 506..529 CDD:275380 8/22 (36%)
leucine-rich repeat 530..553 CDD:275380 7/28 (25%)
leucine-rich repeat 554..577 CDD:275380 5/22 (23%)
leucine-rich repeat 578..604 CDD:275380 7/25 (28%)
leucine-rich repeat 607..630 CDD:275380 4/22 (18%)
leucine-rich repeat 631..652 CDD:275380 0/20 (0%)
LRRCT 665..712 CDD:214507 11/47 (23%)
Ig_3 717..816 CDD:464046 22/104 (21%)
Ig 835..924 CDD:472250 25/116 (22%)
Ig strand B 851..855 CDD:409353 0/3 (0%)
Ig strand C 864..868 CDD:409353 1/3 (33%)
Ig strand E 890..894 CDD:409353 2/3 (67%)
Ig strand F 904..909 CDD:409353 1/4 (25%)
Ig strand G 917..920 CDD:409353 2/2 (100%)
Ig_3 927..1013 CDD:464046 8/47 (17%)
lrrn3bXP_009298331.1 leucine-rich repeat 52..70 CDD:275380 7/30 (23%)
leucine-rich repeat 71..93 CDD:275380 7/31 (23%)
LRR <72..325 CDD:443914 66/266 (25%)
leucine-rich repeat 95..117 CDD:275380 5/21 (24%)
leucine-rich repeat 118..141 CDD:275380 5/22 (23%)
leucine-rich repeat 142..165 CDD:275380 7/22 (32%)
leucine-rich repeat 166..189 CDD:275380 8/22 (36%)
leucine-rich repeat 190..213 CDD:275380 7/22 (32%)
leucine-rich repeat 214..237 CDD:275380 4/22 (18%)
leucine-rich repeat 238..261 CDD:275380 5/22 (23%)
leucine-rich repeat 262..285 CDD:275380 8/24 (33%)
leucine-rich repeat 286..310 CDD:275380 5/23 (22%)
LRR_8 309..370 CDD:404697 18/67 (27%)
leucine-rich repeat 311..333 CDD:275380 6/23 (26%)
leucine-rich repeat 336..357 CDD:275380 7/25 (28%)
leucine-rich repeat 360..372 CDD:275378 4/59 (7%)
LRRCT 368..411 CDD:214507 11/91 (12%)
Ig 421..513 CDD:472250 27/121 (22%)
Ig strand B 440..444 CDD:409353 1/3 (33%)
Ig strand C 453..457 CDD:409353 1/3 (33%)
Ig strand E 479..483 CDD:409353 2/3 (67%)
Ig strand F 493..498 CDD:409353 2/4 (50%)
Ig strand G 506..509 CDD:409353 0/2 (0%)
fn3 518..593 CDD:394996 24/89 (27%)

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