DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and lrrtm1

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:XP_002935525.1 Gene:lrrtm1 / 100493874 XenbaseID:XB-GENE-966481 Length:521 Species:Xenopus tropicalis


Alignment Length:561 Identity:128/561 - (22%)
Similarity:208/561 - (37%) Gaps:155/561 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 NIDCPKDCKCLNVLFDCDKLHLERVPVLPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRNL 326
            |..||:.|:|......|:..::..:|                        .||..:..:||:.|.
 Frog    36 NSGCPRLCRCEGRFLYCESQNVTEIP------------------------HNLSGVMGLSLRYNS 76

  Fly   327 LEVIP--KFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKSNNLVH 389
            |..:.  :|.||..|..|.|.:|||                        ||:|.|:|.|...:..
 Frog    77 LSELQDGQFTGLIQLTWLYLDHNHI------------------------HTVEGNAFHKLRRVKE 117

  Fly   390 LILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQLEINWSTFRG 454
            |.||.|:||::...:|..:.||..::||||.|.:|...:|..|.:|..|.:.:|           
 Frog   118 LTLSSNKITHLANTTFRPMPNLRSVDLSNNNLQSLEADLFHGLRKLTTLHMRYN----------- 171

  Fly   455 LESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQ---GLFNLTKLRHLNLSFNAI 516
                   .:|...:|..||     ...::.:||..||:.||:|.   |||.||:| ||       
 Frog   172 -------AIKFVPVRIFQD-----CRSLKFLDLGYNQLKSLARNSFAGLFKLTEL-HL------- 216

  Fly   517 SRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEEL 581
                                         :|.|    |..:||||          |..:.:|..|
 Frog   217 -----------------------------EHND----LVKVNLAH----------FPRLLSLHSL 238

  Fly   582 NLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASIQV 646
            .:|||:::.::..      ...:.||.::||.||.::.|.......|.:||.|.|.||.|..:..
 Frog   239 FMRRNKVTIVVNS------LDFVWKLEKMDLSGNEIEYIEPHVFESLPHLESLQLDSNRLTYVDP 297

  Fly   647 NAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKNRFPQQAE-HAVCGYPEHLLDRHLKSLSSSEL 710
            ........|:.:.....|:.|..::.....|| :.|..:.: :.:|..||:.....:........
 Frog   298 RILNSWKSLSSITLAGNNWDCGRNVCALASWL-SAFKGRCDGNMLCTTPEYAQGEDVLDAVYFFR 361

  Fly   711 VCVDSPKPRVEQEPDDMLAVNAANITL---ECIA-SSPTAASLAAADELKIKWRHDNQHVQERPA 771
            :|.|         |.|..:.||.:..|   :.|| .||||.|....|....:    ..:||....
 Frog   362 LCDD---------PVDPTSANAISTALNNSDRIAIDSPTATSYNVQDTEGER----TTNVQTATV 413

  Fly   772 VHDGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQC 812
            .::......||...::.....|:.:|.:..:.|.|   ::|
 Frog   414 ANEHHENTVQIHKVVTGTMALIFSFLIVVLMLYVS---WKC 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 87/353 (25%)
leucine-rich repeat 293..316 CDD:275380 2/22 (9%)
leucine-rich repeat 317..338 CDD:275380 7/22 (32%)
leucine-rich repeat 339..362 CDD:275380 6/22 (27%)
leucine-rich repeat 363..386 CDD:275380 6/22 (27%)
leucine-rich repeat 387..410 CDD:275380 7/22 (32%)
leucine-rich repeat 411..434 CDD:275380 9/22 (41%)
leucine-rich repeat 435..457 CDD:275380 3/21 (14%)
leucine-rich repeat 458..481 CDD:275380 4/22 (18%)
leucine-rich repeat 482..505 CDD:275380 11/25 (44%)
leucine-rich repeat 506..529 CDD:275380 3/22 (14%)
leucine-rich repeat 530..553 CDD:275380 2/22 (9%)
leucine-rich repeat 554..577 CDD:275380 6/22 (27%)
leucine-rich repeat 578..604 CDD:275380 5/25 (20%)
leucine-rich repeat 607..630 CDD:275380 7/22 (32%)
leucine-rich repeat 631..652 CDD:275380 7/20 (35%)
LRRCT 665..712 CDD:214507 7/47 (15%)
Ig_3 717..816 CDD:464046 22/100 (22%)
Ig 835..924 CDD:472250
Ig strand B 851..855 CDD:409353
Ig strand C 864..868 CDD:409353
Ig strand E 890..894 CDD:409353
Ig strand F 904..909 CDD:409353
Ig strand G 917..920 CDD:409353
Ig_3 927..1013 CDD:464046
lrrtm1XP_002935525.1 LRR <48..333 CDD:443914 95/413 (23%)
leucine-rich repeat 70..90 CDD:275380 7/19 (37%)
leucine-rich repeat 91..114 CDD:275380 12/46 (26%)
leucine-rich repeat 115..138 CDD:275380 7/22 (32%)
leucine-rich repeat 139..162 CDD:275380 9/22 (41%)
leucine-rich repeat 163..186 CDD:275380 7/45 (16%)
leucine-rich repeat 187..210 CDD:275380 9/22 (41%)
leucine-rich repeat 211..234 CDD:275380 13/73 (18%)
leucine-rich repeat 235..257 CDD:275380 5/27 (19%)
leucine-rich repeat 258..281 CDD:275380 7/22 (32%)
leucine-rich repeat 282..300 CDD:275380 7/17 (41%)
Blue background indicates that the domain is not in the aligned region.

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