DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lbk and lrig1

DIOPT Version :9

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:XP_002938412.1 Gene:lrig1 / 100491453 XenbaseID:XB-GENE-494193 Length:1043 Species:Xenopus tropicalis


Alignment Length:1009 Identity:331/1009 - (32%)
Similarity:503/1009 - (49%) Gaps:92/1009 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 CPKDCKCLNVLFDCDKLHLERVPV-LPSYVQTLHLANNKLNDTTVLEIRNLLNLTKVSLKRNLLE 328
            ||..|.|...|.||..|.|...|. ||::...|:|::|||.:........|..|.:|.|..|.|.
 Frog    28 CPPSCTCTGDLLDCSNLGLTAPPSDLPAWTVHLNLSSNKLKEIDPAAFAQLPELREVHLGHNELT 92

  Fly   329 VIPKFIGLSG--LKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNSFPKSNNLVHLI 391
            .|| .:|.:.  :..|.|.:|.|.||....|.....|.|||||.|:|..|...|||....:..|.
 Frog    93 GIP-HLGTAAPQVTTLSLHHNKIRSIDPSQLKPYVALETLDLSSNELTEIRSGSFPAGLRIKELH 156

  Fly   392 LSFNEITNVNEHSFATLN-NLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQLE-INWSTFRG 454
            |..|:|:::...||.:|: :|..|.||.||:|.||::||: |.:|.:|.||.|::. |...||:|
 Frog   157 LGSNKISSLEPGSFDSLSRSLLTLRLSKNRISQLPVKVFR-LPRLTQLELNRNRIRLIEGLTFQG 220

  Fly   455 LESMKNLQLKSNKIRALQDGVFYVMHKIETIDLAMNQISSLSRQGLFNLTKLRHLNLSFNAISRI 519
            |||::.|:|:.|.|..|.||.|:.:.:::.:.|..|.::.::...|:.|..|:.|:||.|:||.|
 Frog   221 LESLEVLKLQRNNISKLTDGAFWGLSRMQILHLENNSLTEVNSGSLYGLLSLQQLHLSHNSISTI 285

  Fly   520 EVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQENTFDCVKNLEELNLR 584
            ....|.|.|.|:.|.||:|.:.......|..|..|..|.|::|.:.::.|..|..:|:|..|.|.
 Frog   286 SSAGWSFCQKLQELVLSHNNLTRLDEGSLADLGVLDVLRLSYNSISHIAEGAFKGLKSLRILELD 350

  Fly   585 RNRLSWIIEDQSAAAPFKGLRKLRRLDLHGNNLKQISTKAMSGLNNLEILNLGSNALASIQVNAF 649
            .|.:|..|||.:.|  |.||..|.:|.|.||.:|.::.:|.||:.:||.||||.|||.|:...||
 Frog   351 HNEISGTIEDTNGA--FIGLESLNKLTLFGNKIKSVAKRAFSGIESLEHLNLGENALRSVHSEAF 413

  Fly   650 EHMLRLNKLVFKSLNFICDCDLVWFQQWLKNRFPQQAEHAVCGYPEHLLDRHLKSLSSSELVCVD 714
            ..|..|.:||..|.:|:|||.|.|..|||.:|..|....|.|.:|..|.:..:.|:.....||.|
 Frog   414 GEMKNLKELVVGSSSFLCDCHLKWLPQWLTSRRLQTKVKASCAHPGSLNNTSIFSVPPRSFVCDD 478

  Fly   715 SPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAAADELKIKWRHDNQHVQERPAVHDGASTE 779
            .|||::..:|:..:||....|...|.|:|.:.:.:..|      |:.||:.:......:..:.||
 Frog   479 LPKPQIRVQPETTMAVLGKAIRFTCSAASSSPSPMTFA------WKKDNEILHNAEVENFASGTE 537

  Fly   780 TQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFGTTYAQKFKISIGIHPTFLQVPSNLT 844
               |....|..|:|   |.|.|:|:...|||||:::|.||.:|:.|.::::.:.|:|::.|.:.|
 Frog   538 ---REGEVTEYTTI---LHLRNLTFAHEGRYQCIITNDFGPSYSSKARLTVNVLPSFIKTPRDST 596

  Fly   845 LDAGEMARLVCSASGDPTPEIALQKFGGSEFPAATERRLQVIREENAFLITNAKPSDSGIYTCTA 909
            :.||..|||.|:|.|.||||||.||.||::||||.|||:.|:.:::.|.|.:.|..|.|:|:|||
 Frog   597 IRAGTRARLECAADGHPTPEIAWQKDGGTDFPAARERRMHVMPDDDVFFIMDVKIEDMGVYSCTA 661

  Fly   910 LSAAGEIKVNATLVVNDKPQPSIPLVHQEVVVGRTCVLQCLSETANADFELEHPHREWFKENKPI 974
            .::||.:..||||.|.:.|....||..:.|..|.|..|||.:..:      ..|...|.|.::|:
 Frog   662 QNSAGSVSANATLTVLEMPFLVHPLEDRVVSTGATLALQCKASGS------PPPRITWLKGDEPL 720

  Fly   975 HISPTAPDGDRYYFSNNKELLVILNAQSNDAGHFRCEITDNSRTFTLQSELVVV--------KEN 1031
            .::      :|::::...:||:|....|.|||.:.||:::...|....|.:.:.        |:.
 Frog   721 VMT------ERHHYTPGNQLLIIRQVMSEDAGKYTCEMSNTLGTERAYSHVSIASTAGCQGEKDK 779

  Fly  1032 LNWVVLLVGIITVTVICVVVDCCIIWCTLRYQ-KKKLRMSLAAERHSTQLR---PRSLADLG-CS 1091
            :.. ::..||||:.|:|.:|...::|..:.|| :||..:........|.:.   |..|:..| ||
 Frog   780 MEG-MMTFGIITIAVVCSIVLTSLVWVCIIYQTRKKSEVYSVTNTDETIVPPDVPSYLSSQGLCS 843

  Fly  1092 YDEANHRRLTVMSTPPSEQRCLEQGLTLSYLRQTDL------EA--QQDHLSSKDS-GTGSDAAV 1147
            .|.         |..|..:.|     :::| ||..|      ||  ..|.|...:| |.|.....
 Frog   844 SDG---------SVNPEAEAC-----SVAY-RQPRLCTCSSGEACKTADGLFGPESTGFGFQVVC 893

  Fly  1148 KRTLDDFEVAMPSHKHHTDDEEEEEVEEVYEENEPPYIKHTYEVNYAEPE----QHLFLQNNNHN 1208
            ...||.  .|..|.|.....:..:.|:..|:  :|......|..|...|.    .|....:...|
 Frog   894 TDCLDG--GAGYSSKSDYCPQTVQSVDCSYQ--KPAGSHDRYMCNGDTPTALSYHHNAAMDEGSN 954

  Fly  1209 YDGGG---------IGVAGGVNKMVPNALLRKCS 1233
            .:.||         ||.|..:|    :.||..|:
 Frog   955 LESGGNMYPSNHERIGTAKALN----SNLLDPCA 984

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR_RI <275..446 CDD:238064 65/174 (37%)
leucine-rich repeat 293..316 CDD:275380 6/22 (27%)
LRR_8 316..373 CDD:290566 22/58 (38%)
leucine-rich repeat 317..338 CDD:275380 8/20 (40%)
leucine-rich repeat 339..362 CDD:275380 7/22 (32%)
leucine-rich repeat 363..386 CDD:275380 12/22 (55%)
LRR_8 386..445 CDD:290566 24/59 (41%)
leucine-rich repeat 387..410 CDD:275380 7/23 (30%)
leucine-rich repeat 411..434 CDD:275380 12/22 (55%)
leucine-rich repeat 435..457 CDD:275380 10/22 (45%)
LRR_8 457..516 CDD:290566 18/58 (31%)
leucine-rich repeat 458..481 CDD:275380 8/22 (36%)
leucine-rich repeat 482..505 CDD:275380 4/22 (18%)
LRR_RI <498..669 CDD:238064 67/170 (39%)
LRR_8 504..564 CDD:290566 22/59 (37%)
leucine-rich repeat 506..529 CDD:275380 10/22 (45%)
leucine-rich repeat 530..553 CDD:275380 7/22 (32%)
leucine-rich repeat 554..577 CDD:275380 6/22 (27%)
LRR_8 576..641 CDD:290566 29/64 (45%)
leucine-rich repeat 578..604 CDD:275380 10/25 (40%)
leucine-rich repeat 607..630 CDD:275380 9/22 (41%)
leucine-rich repeat 631..652 CDD:275380 12/20 (60%)
LRRCT 665..712 CDD:214507 16/46 (35%)
IG 734..823 CDD:214652 26/88 (30%)
Ig 735..823 CDD:143165 26/87 (30%)
I-set 834..924 CDD:254352 45/89 (51%)
Ig 851..924 CDD:299845 39/72 (54%)
IG 936..1027 CDD:214652 22/90 (24%)
Ig 961..1020 CDD:143165 15/58 (26%)
lrig1XP_002938412.1 LRRNT 28..59 CDD:214470 12/30 (40%)
leucine-rich repeat 57..80 CDD:275378 6/22 (27%)
PLN00113 <58..>370 CDD:215061 113/315 (36%)
leucine-rich repeat 104..127 CDD:275380 7/22 (32%)
leucine-rich repeat 128..151 CDD:275380 12/22 (55%)
leucine-rich repeat 152..199 CDD:275380 19/47 (40%)
leucine-rich repeat 200..223 CDD:275380 10/22 (45%)
leucine-rich repeat 224..247 CDD:275380 8/22 (36%)
leucine-rich repeat 248..295 CDD:275380 14/46 (30%)
leucine-rich repeat 272..292 CDD:275380 9/19 (47%)
leucine-rich repeat 296..319 CDD:275380 7/22 (32%)
leucine-rich repeat 320..343 CDD:275380 6/22 (27%)
LRR_8 343..405 CDD:338972 28/63 (44%)
leucine-rich repeat 344..370 CDD:275380 12/27 (44%)
leucine-rich repeat 371..394 CDD:275380 9/22 (41%)
leucine-rich repeat 395..413 CDD:275380 10/17 (59%)
LRRCT 429..477 CDD:214507 17/47 (36%)
leucine-rich repeat 445..471 CDD:275380 7/25 (28%)
IG 488..582 CDD:214652 31/105 (30%)
Ig_1 603..677 CDD:143240 39/73 (53%)
I-set 680..759 CDD:369462 23/90 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 104 1.000 Domainoid score I6618
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 474 1.000 Inparanoid score I1456
OMA 1 1.010 - - QHG49439
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001817
OrthoInspector 1 1.000 - - otm49536
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1179
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

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