DRSC/TRiP Functional Genomics Resources

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Protein Alignment lbk and lrrn1l

DIOPT Version :10

Sequence 1:NP_611091.2 Gene:lbk / 36788 FlyBaseID:FBgn0034083 Length:1252 Species:Drosophila melanogaster
Sequence 2:NP_001106456.1 Gene:lrrn1l / 100127637 XenbaseID:XB-GENE-492890 Length:738 Species:Xenopus tropicalis


Alignment Length:844 Identity:174/844 - (20%)
Similarity:296/844 - (35%) Gaps:259/844 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   265 CPKDCKCLN-------------VLFDCDKLHLERVPV-LPSYVQTLHLANNKLNDTTVLEIRNLL 315
            ||..|.|..             ...||:.|.|..:|. |.:.:|.|.|.:||::..| .|::.|.
 Frog    38 CPPQCVCETRPWFTPQSVYHEAKTVDCNDLLLTHIPENLSTDIQVLLLQSNKISHLT-WELQELS 101

  Fly   316 NLTKVSLKRNLLEVIPKFIGLSGLKHLVLANNHITSISSESLAALPLLRTLDLSRNKLHTIELNS 380
            |||:                                              ||||:|...:|:...
 Frog   102 NLTE----------------------------------------------LDLSQNHFQSIDDLG 120

  Fly   381 FPKSNNLVHLILSFNEITNVNEHSFATLNNLTDLELSNNRLSTLPIRVFKNLNQLKKLALNFNQL 445
            ....:.|:.|.|..|::..:.::|...|.:|.:|.:::|::|.:..|.|..|.:|.:|.||.|:|
 Frog   121 VSNLSQLITLYLEENQLRELPDYSLKDLGSLEELYINHNQISYIGPRAFSGLGRLLRLHLNANRL 185

  Fly   446 EI---NWSTFRGLESMKNLQLKSNKIRALQDGVFYVMHKIETIDLA---MNQISSLSRQGLFNLT 504
            ||   .|  |..|.:::.|.:..|.:.|||...|..:.::.::.||   :..|...:.|||    
 Frog   186 EIIDPRW--FEDLPNLEILMVGENPVTALQSLNFQPLGRLHSLVLAGMELEHIPENAFQGL---- 244

  Fly   505 KLRHLNLSFNAISRIEVDTWEFTQSLEVLDLSNNAINEFKPQHLDCLHRLKTLNLAHNRLQYLQE 569
                                ::.:||...|   |.:.|...:.|..|..||.|:|..|.:..::.
 Frog   245 --------------------DYLESLSFFD---NRLTEVPKEALKNLKLLKFLDLNKNPIPEIRG 286

  Fly   570 NTFDCVKNLEELNLRRNRLSWIIEDQSAAAPFKGLRKLRRLDLHGN-NLKQISTKAM-SGLNNLE 632
            ..|..:::||||:|  |.:..:  ::..|..|:.|.:|.:|::..| .|..:..:|. |.|..|:
 Frog   287 GDFTGMEHLEELSL--NSMEEL--ERVEAEAFQDLPELIKLEMCNNPRLSYLDPEAFSSNLGALK 347

  Fly   633 ILNLGSNALASIQVNAFEHMLRLNKLVFKSLNFICDCDLVWFQQWLKNRFPQQAEHAVCGYPEHL 697
            .|.|.:|.||.:.:..|:.:..|.::...|....|||...|                        
 Frog   348 TLLLNNNRLAMVPLKIFQALPGLLEISLYSNPIRCDCQNCW------------------------ 388

  Fly   698 LDRHLKSLSSSELVCVDSPKPRVEQEPDDMLAVNAANITLECIASSPTAASLAAADELKIKWRHD 762
                 |.||...|:                    .|..|| ||  :|...|           .|.
 Frog   389 -----KGLSKLRLI--------------------EAQATL-CI--NPPLVS-----------GHL 414

  Fly   763 NQHVQERPAVHDGASTETQIRHDLSTNQTSIYGYLRLTNVTYESAGRYQCVVSNAFGTTYAQKFK 827
            .|.:|                                                   |..:..:..
 Frog   415 FQEIQ---------------------------------------------------GQAWLNRCP 428

  Fly   828 ISIGIHPTFLQVPSNLTLDAGEMARLVCSASGDPTPEIALQKFGGSEFPAATERRLQVIREENAF 892
            ..|..|    .:|....:...:..:|.|.|||.|.|||......| |....|..|:: |....:.
 Frog   429 PLIDTH----LIPPQFQIARHQPVKLSCQASGHPKPEIYWMTPHG-ERVTGTNGRVK-INAGGSL 487

  Fly   893 LITNAKPSDSGIYTCTALSAAGE------IKVNAT--------LVVNDKPQPSIPLVHQEVVVGR 943
            .||:|...|||.|||...::.|.      :.:|.|        |:|..|...:..:|..:::.|.
 Frog   488 EITDAVEEDSGSYTCQMWNSDGTDSKSVFVSINRTQEPEAMSLLMVTKKVHSNFAVVEWKMLSGS 552

  Fly   944 TCVLQCL--SETANADFELEHPHREW-------FKENKPIHISPTAPDGDRYYFSNNKELLVILN 999
            ......|  .:.::|...:.:||..:       .:|....|:.|          |...|:.:.::
 Frog   553 GVSPNVLVPFQWSSATMRIHNPHISYTAKVPLEVQEYNLTHLQP----------STKYEVCLTVS 607

  Fly  1000 AQSNDAGHFRCEITDNSRTFTLQSELVVVKENLNWVVLLVGIITVTVICVVVDCCIIWCTLRYQ 1063
            :.|..:......||....:|:    :.||...::..:.......|..:|:......|.|..|::
 Frog   608 SVSQPSQQSCLNITTRDASFS----MAVVGRPVSIALSAALGSLVAALCMAALIIYIGCHCRHK 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lbkNP_611091.2 LRR <293..642 CDD:443914 86/356 (24%)
leucine-rich repeat 293..316 CDD:275380 8/22 (36%)
leucine-rich repeat 317..338 CDD:275380 2/20 (10%)
leucine-rich repeat 339..362 CDD:275380 0/22 (0%)
leucine-rich repeat 363..386 CDD:275380 6/22 (27%)
leucine-rich repeat 387..410 CDD:275380 6/22 (27%)
leucine-rich repeat 411..434 CDD:275380 7/22 (32%)
leucine-rich repeat 435..457 CDD:275380 11/24 (46%)
leucine-rich repeat 458..481 CDD:275380 6/22 (27%)
leucine-rich repeat 482..505 CDD:275380 6/25 (24%)
leucine-rich repeat 506..529 CDD:275380 0/22 (0%)
leucine-rich repeat 530..553 CDD:275380 6/22 (27%)
leucine-rich repeat 554..577 CDD:275380 6/22 (27%)
leucine-rich repeat 578..604 CDD:275380 8/25 (32%)
leucine-rich repeat 607..630 CDD:275380 7/24 (29%)
leucine-rich repeat 631..652 CDD:275380 7/20 (35%)
LRRCT 665..712 CDD:214507 8/46 (17%)
Ig_3 717..816 CDD:464046 10/98 (10%)
Ig 835..924 CDD:472250 28/102 (27%)
Ig strand B 851..855 CDD:409353 1/3 (33%)
Ig strand C 864..868 CDD:409353 2/3 (67%)
Ig strand E 890..894 CDD:409353 0/3 (0%)
Ig strand F 904..909 CDD:409353 3/4 (75%)
Ig strand G 917..920 CDD:409353 0/2 (0%)
Ig_3 927..1013 CDD:464046 13/94 (14%)
lrrn1lNP_001106456.1 leucine-rich repeat 60..79 CDD:275380 6/18 (33%)
LRR <78..419 CDD:443914 108/483 (22%)
leucine-rich repeat 80..102 CDD:275380 8/22 (36%)
leucine-rich repeat 103..126 CDD:275380 8/68 (12%)
leucine-rich repeat 127..150 CDD:275380 6/22 (27%)
leucine-rich repeat 151..174 CDD:275380 7/22 (32%)
leucine-rich repeat 175..198 CDD:275380 11/24 (46%)
leucine-rich repeat 199..222 CDD:275380 6/22 (27%)
leucine-rich repeat 223..246 CDD:275380 6/46 (13%)
leucine-rich repeat 247..294 CDD:275380 13/49 (27%)
leucine-rich repeat 295..319 CDD:275380 9/27 (33%)
leucine-rich repeat 320..345 CDD:275380 7/24 (29%)
leucine-rich repeat 346..367 CDD:275380 7/20 (35%)
leucine-rich repeat 370..382 CDD:275378 2/11 (18%)
IG_like 437..519 CDD:214653 25/83 (30%)
Ig strand B 448..452 CDD:409353 1/3 (33%)
Ig strand C 461..465 CDD:409353 2/3 (67%)
Ig strand E 485..489 CDD:409353 0/3 (0%)
Ig strand F 499..504 CDD:409353 3/4 (75%)
Ig strand G 512..515 CDD:409353 0/2 (0%)

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